Difference between revisions of "MIxS"

Note that only term definitions of 17 collections out of 20 can be displayed here in detail, the remaining collections can be accessed on further result pages (the link at the bottom of this page).

Index to concepts (all collections combined)

By label: HRT • IHMC ethnicity • IHMC medication code • absolute air humidity • adapters • air temperature regimen • alkalinity • alkyl diethers • altitude • altitude • aminopeptidase activity • ammonium • amniotic fluid/color • amniotic fluid/foetal health status • amniotic fluid/gestation state • amniotic fluid/maternal health status • annotation source • antibiotic regimen • assembly • assembly name • atmospheric data • bacterial carbon production • bacterial production • bacterial respiration • barometric pressure • biochemical oxygen demand • biomass • birth control • bishomohopanol • blood/blood disorder • bromide • building occupancy type • building setting • calcium • carbon dioxide • carbon monoxide • carbon/nitrogen ratio • chemical administration • chemical mutagen • chemical oxygen demand • chimera check • chloride • chlorophyll • climate environment • collection date • composite design/sieving (if any) • conductivity • current land use • current vegetation • current vegetation method • density • dermatology disorder • dew point • diether lipids • dissolved carbon dioxide • dissolved hydrogen • dissolved inorganic carbon • dissolved inorganic nitrogen • dissolved inorganic phosphorus • dissolved organic carbon • dissolved organic nitrogen • dissolved oxygen • dominant hand • douche • downward PAR • drainage classification • drug usage • efficiency percent • elevation • emulsions • encoded traits • environment (biome) • environment (feature) • environment (material) • environmental package • estimated Size • experimental factor • extrachromosomal elements • extreme_unusual_properties/Al saturation • extreme_unusual_properties/Al saturation method • extreme_unusual_properties/heavy metals • extreme_unusual_properties/heavy metals method • extreme_unusual_properties/salinity • extreme_unusual_properties/salinity method • fertilizer regimen • filter type • finishing strategy • fluorescence • fungicide regimen • gaseous environment • gaseous substances • gastrointestinal tract disorder • geographic location (altitude/elevation) • geographic location (country and/or sea,region) • geographic location (depth) • geographic location (latitude and longitude) • glucosidase activity • gravidity • gravity • growth hormone regimen • growth media • gynecological disorder • health or disease status of specific host at time of collection • heating and cooling system type • herbicide regimen • history/agrochemical additions • history/crop rotation • history/extreme events • history/fire • history/flooding • history/previous land use • history/previous land use method • history/tillage • horizon • horizon method • host HIV status • host age • host blood pressure diastolic • host blood pressure systolic • host body habitat • host body product • host body site • host body temperature • host body-mass index • host color • host common name • host diet • host disease status • host dry mass • host family relationship • host genotype • host growth conditions • host height • host infra-specific name • host infra-specific rank • host last meal • host length • host life stage • host occupation • host phenotype • host pulse • host sex • host shape • host specificity or range • host subject id • host substrate • host taxid • host total mass • host wet mass • humidity • humidity regimen • hysterectomy • indoor space • indoor surface • industrial effluent percent • inorganic particles • investigation type • isolation and growth condition • known pathogenicity • library construction method • library reads sequenced • library screening strategy • library size • library vector • light intensity • light type • link to classification information • link to climate information • links to additional analysis • liver disorder • lung/nose-throat disorder • lung/pulmonary disorder • magnesium • major diet change in last six months • mean annual and seasonal precipitation • mean annual and seasonal temperature • mean friction velocity • mean peak friction velocity • mechanical damage • medical history performed • menarche • menopause • methane • microbial biomass • microbial biomass method • mineral nutrient regimen • miscellaneous parameter • multiplex identifiers • n-alkanes • nitrate • nitrite • nitrogen • non-mineral nutrient regimen • nose/mouth/teeth/throat disorder • nucleic acid amplification • nucleic acid extraction • number of replicons • observed biotic relationship • occupancy at sampling • occupant density at sampling • organic carbon • organic matter • organic nitrogen • organic particles • organism count • oxygen • oxygenation status of sample • pH • pH method • pH regimen • particle classification • particulate organic carbon • particulate organic nitrogen • pcr conditions • pcr primers • perturbation • pesticide regimen • petroleum hydrocarbon • phaeopigments • phosphate • phospholipid fatty acid • photon flux • plant body site • plant product • ploidy • pollutants • pooling of DNA extracts (if done) • porosity • potassium • pre-treatment • pregnancy • presence of pets or farm animals • pressure • primary production • primary treatment • profile position • project name • propagation • radiation regimen • rainfall regimen • reactor type • redox potential • reference for biomaterial • relationship to oxygen • relative air humidity • relevant electronic resources • relevant standard operating procedures • respirable particulate matter • salinity • salt regimen • sample collection device or method • sample material processing • sample salinity • sample size • sample size sorting method • sample storage duration • sample storage location • sample storage temperature • sample volume or weight for DNA extraction • seasonal environment • secondary treatment • sediment type • sequencing method • sewage type • sexual activity • silicate • slope aspect • slope gradient • sludge retention time • smoker • sodium • soil type • soil type method • soil_taxonomic/FAO classification • soil_taxonomic/local classification • soil_taxonomic/local classification method • solar irradiance • soluble inorganic material • soluble organic material • soluble reactive phosphorus • source material identifiers • space typical state • special diet • specific host • standing water regimen • storage conditions (fresh/frozen/other) • study completion status • submitted to insdc • subspecific genetic lineage • substructure type • sulfate • sulfide • surface humidity • surface material • surface moisture • surface moisture pH • surface temperature • surface-air contaminant • suspended particulate matter • suspended solids • target gene • target subfragment • temperature • tertiary treatment • texture • texture method • tidal stage • time since last toothbrushing • time since last wash • tissue culture growth media • total carbon • total depth of water column • total dissolved nitrogen • total inorganic nitrogen • total nitrogen • total nitrogen method • total organic carbon • total organic carbon method • total particulate carbon • total phosphate • total phosphorus • travel outside the country in last six months • trophic level • turbidity • twin sibling presence • typical occupant density • urine/collection method • urine/kidney disorder • urine/urogenital tract disorder • urogenital disorder • ventilation rate • ventilation type • volatile organic compounds • wastewater type • water content • water content method • water current • water temperature regimen • watering regimen • weight loss in last three months • wind direction • wind speed

By concept name: mixs:abs air humidity • mixs:adapters • mixs:agrochem addition • mixs:air temp regm • mixs:al sat • mixs:al sat meth • mixs:alkalinity • mixs:alkyl diethers • mixs:alt • mixs:alt elev • mixs:altitude • mixs:aminopept act • mixs:ammonium • mixs:amniotic fluid color • mixs:annot source • mixs:annual season precpt • mixs:annual season temp • mixs:antibiotic regm • mixs:assembly • mixs:assembly name • mixs:atmospheric data • mixs:bac prod • mixs:bac resp • mixs:bacteria carb prod • mixs:barometric press • mixs:biochem oxygen dem • mixs:biomass • mixs:biotic relationship • mixs:birth control • mixs:bishomohopanol • mixs:blood blood disord • mixs:bromide • mixs:build occup type • mixs:building setting • mixs:calcium • mixs:carb dioxide • mixs:carb monoxide • mixs:carb nitro ratio • mixs:chem administration • mixs:chem mutagen • mixs:chem oxygen dem • mixs:chimera check • mixs:chloride • mixs:chlorophyll • mixs:climate environment • mixs:collection date • mixs:conduc • mixs:crop rotation • mixs:cur land use • mixs:cur vegetation • mixs:cur vegetation meth • mixs:density • mixs:depth • mixs:dermatology disord • mixs:dew point • mixs:diet last six month • mixs:diether lipids • mixs:diss carb dioxide • mixs:diss hydrogen • mixs:diss inorg carb • mixs:diss inorg nitro • mixs:diss inorg phosp • mixs:diss org carb • mixs:diss org nitro • mixs:diss oxygen • mixs:dominant hand • mixs:douche • mixs:down par • mixs:drainage class • mixs:drug usage • mixs:efficiency percent • mixs:elev • mixs:emulsions • mixs:encoded traits • mixs:env biome • mixs:env feature • mixs:env material • mixs:env package • mixs:estimated size • mixs:experimental factor • mixs:extrachrom elements • mixs:extreme event • mixs:extreme salinity • mixs:fao class • mixs:fertilizer regm • mixs:filter type • mixs:finishing strategy • mixs:fire • mixs:flooding • mixs:fluor • mixs:foetal health stat • mixs:fungicide regm • mixs:gaseous environment • mixs:gaseous substances • mixs:gastrointest disord • mixs:geo loc name • mixs:gestation state • mixs:glucosidase act • mixs:gravidity • mixs:gravity • mixs:growth hormone regm • mixs:growth med • mixs:gynecologic disord • mixs:health disease stat • mixs:heat cool type • mixs:heavy metals • mixs:heavy metals meth • mixs:herbicide regm • mixs:horizon • mixs:horizon meth • mixs:host age • mixs:host blood press diast • mixs:host blood press syst • mixs:host body habitat • mixs:host body mass index • mixs:host body product • mixs:host body site • mixs:host body temp • mixs:host color • mixs:host common name • mixs:host diet • mixs:host disease stat • mixs:host dry mass • mixs:host family relationship • mixs:host genotype • mixs:host growth cond • mixs:host height • mixs:host hiv stat • mixs:host infra specific name • mixs:host infra specific rank • mixs:host last meal • mixs:host length • mixs:host life stage • mixs:host occupation • mixs:host phenotype • mixs:host pulse • mixs:host sex • mixs:host shape • mixs:host spec range • mixs:host subject id • mixs:host substrate • mixs:host taxid • mixs:host tot mass • mixs:host wet mass • mixs:hrt • mixs:humidity • mixs:humidity regm • mixs:hysterectomy • mixs:ihmc ethnicity • mixs:ihmc medication code • mixs:indoor space • mixs:indoor surf • mixs:indust eff percent • mixs:inorg particles • mixs:investigation type • mixs:isol growth condt • mixs:kidney disord • mixs:lat lon • mixs:lib const meth • mixs:lib reads seqd • mixs:lib screen • mixs:lib size • mixs:lib vector • mixs:light intensity • mixs:light type • mixs:link addit analys • mixs:link class info • mixs:link climate info • mixs:liver disord • mixs:local class • mixs:local class meth • mixs:magnesium • mixs:maternal health stat • mixs:mean frict vel • mixs:mean peak frict vel • mixs:mechanical damage • mixs:medic hist perform • mixs:menarche • mixs:menopause • mixs:methane • mixs:microbial biomass • mixs:microbial biomass meth • mixs:mid • mixs:mineral nutr regm • mixs:misc param • mixs:n alkanes • mixs:nitrate • mixs:nitrite • mixs:nitro • mixs:non mineral nutr regm • mixs:nose mouth teeth throat disord • mixs:nose throat disord • mixs:nucl acid amp • mixs:nucl acid ext • mixs:num replicons • mixs:occup samp • mixs:occupant dens samp • mixs:org carb • mixs:org matter • mixs:org nitro • mixs:org particles • mixs:organism count • mixs:oxy stat samp • mixs:oxygen • mixs:part org carb • mixs:part org nitro • mixs:particle class • mixs:pathogenicity • mixs:pcr cond • mixs:pcr primers • mixs:perturbation • mixs:pesticide regm • mixs:pet farm animal • mixs:petroleum hydrocarb • mixs:ph • mixs:ph meth • mixs:ph regm • mixs:phaeopigments • mixs:phosphate • mixs:phosplipid fatt acid • mixs:photon flux • mixs:plant body site • mixs:plant product • mixs:ploidy • mixs:pollutants • mixs:pool dna extracts • mixs:porosity • mixs:potassium • mixs:pre treatment • mixs:pregnancy • mixs:pressure • mixs:previous land use • mixs:previous land use meth • mixs:primary prod • mixs:primary treatment • mixs:profile position • mixs:project name • mixs:propagation • mixs:pulmonary disord • mixs:radiation regm • mixs:rainfall regm • mixs:reactor type • mixs:redox potential • mixs:ref biomaterial • mixs:rel air humidity • mixs:rel to oxygen • mixs:resp part matter • mixs:salinity • mixs:salinity meth • mixs:salt regm • mixs:samp collect device • mixs:samp mat process • mixs:samp salinity • mixs:samp size • mixs:samp sort meth • mixs:samp store dur • mixs:samp store loc • mixs:samp store temp • mixs:samp vol we dna ext • mixs:season environment • mixs:secondary treatment • mixs:sediment type • mixs:seq meth • mixs:sewage type • mixs:sexual act • mixs:sieving • mixs:silicate • mixs:slope aspect • mixs:slope gradient • mixs:sludge retent time • mixs:smoker • mixs:sodium • mixs:soil type • mixs:soil type meth • mixs:solar irradiance • mixs:soluble inorg mat • mixs:soluble org mat • mixs:soluble react phosp • mixs:sop • mixs:source mat id • mixs:space typ state • mixs:special diet • mixs:specific host • mixs:standing water regm • mixs:store cond • mixs:study complt stat • mixs:submitted to insdc • mixs:subspecf gen lin • mixs:substructure type • mixs:sulfate • mixs:sulfide • mixs:surf air cont • mixs:surf humidity • mixs:surf material • mixs:surf moisture • mixs:surf moisture ph • mixs:surf temp • mixs:suspend part matter • mixs:suspend solids • mixs:target gene • mixs:target subfragment • mixs:temp • mixs:tertiary treatment • mixs:texture • mixs:texture meth • mixs:tidal stage • mixs:tillage • mixs:time last toothbrush • mixs:time since last wash • mixs:tiss cult growth med • mixs:tot carb • mixs:tot depth water col • mixs:tot diss nitro • mixs:tot inorg nitro • mixs:tot n meth • mixs:tot nitro • mixs:tot org c meth • mixs:tot org carb • mixs:tot part carb • mixs:tot phosp • mixs:tot phosphate • mixs:travel out six month • mixs:trophic level • mixs:turbidity • mixs:twin sibling • mixs:typ occupant dens • mixs:urine collect meth • mixs:url • mixs:urogenit disord • mixs:urogenit tract disor • mixs:ventilation rate • mixs:ventilation type • mixs:volatile org comp • mixs:wastewater type • mixs:water content • mixs:water content soil meth • mixs:water current • mixs:water temp regm • mixs:watering regm • mixs:weight loss 3 month • mixs:wind direction • mixs:wind speed

MIxS Environment Vocabulary

Index to MIxS Environment Vocabulary

By label: collection date • environment (biome) • environment (feature) • environment (material) • environmental package • geographic location (altitude/elevation) • geographic location (country and/or sea,region) • geographic location (latitude and longitude)

By concept name: mixs:alt elev • mixs:collection date • mixs:env biome • mixs:env feature • mixs:env material • mixs:env package • mixs:geo loc name • mixs:lat lon

Concept definitions in MIxS Environment Vocabulary

Concept Name:	mixs:alt elev
Normative URI	http://gensc.org/ns/mixs/alt_elev
Label	geographic location (altitude/elevation)
Definition	Please refer to the definitions of either altitude or elevation in the environmental packages
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/alt_elev,
Concept Name:	mixs:collection date
Normative URI	http://gensc.org/ns/mixs/collection_date
Label	collection date
Definition	The time of sampling, either as an instance (single point in time) or interval. In case no exact time is available, the date/time can be right truncated i.e. all of these are valid times: 2008-01-23T19:23:10+00:00; 2008-01-23T19:23:10; 2008-01-23; 2008-01; 2008; Except: 2008-01; 2008 all are ISO8601 compliant
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:env biome
Normative URI	http://gensc.org/ns/mixs/env_biome
Label	environment (biome)
Definition	Biomes are defined based on factors such as plant structures, leaf types, plant spacing, and other factors like climate. Biome should be treated as the descriptor of the broad ecological context of a sample. Examples include: desert, taiga, deciduous woodland, or coral reef. EnvO (v 2013-06-14) terms can be found via the link: www.environmentontology.org/Browse-EnvO
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/env_biome,
Concept Name:	mixs:env feature
Normative URI	http://gensc.org/ns/mixs/env_feature
Label	environment (feature)
Definition	Environmental feature level includes geographic environmental features. Compared to biome, feature is a descriptor of the more local environment. Examples include: harbor, cliff, or lake. EnvO (v 2013-06-14) terms can be found via the link: www.environmentontology.org/Browse-EnvO
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/env_feature,
Concept Name:	mixs:env material
Normative URI	http://gensc.org/ns/mixs/env_material
Label	environment (material)
Definition	The environmental material level refers to the material that was displaced by the sample, or material in which a sample was embedded, prior to the sampling event. Environmental material terms are generally mass nouns. Examples include: air, soil, or water. EnvO (v 2013-06-14) terms can be found via the link: www.environmentontology.org/Browse-EnvO
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/env_material,
Concept Name:	mixs:env package
Normative URI	http://gensc.org/ns/mixs/env_package
Label	environmental package
Definition	MIGS/MIMS/MIMARKS extension for reporting of measurements and observations obtained from one or more of the environments where the sample was obtained. All environmental packages listed here are further defined in separate subtables. By giving the name of the environmental package, a selection of fields can be made from the subtables and can be reported
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/env_package,
Concept Name:	mixs:geo loc name
Normative URI	http://gensc.org/ns/mixs/geo_loc_name
Label	geographic location (country and/or sea,region)
Definition	The geographical origin of the sample as defined by the country or sea name followed by specific region name. Country or sea names should be chosen from the INSDC country list (http://insdc.org/country.html), or the GAZ ontology (v 1.512) (http://purl.bioontology.org/ontology/GAZ)
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/geo_loc_name,
Examples	Germany:Sylt:Hausstrand
Concept Name:	mixs:lat lon
Normative URI	http://gensc.org/ns/mixs/lat_lon
Label	geographic location (latitude and longitude)
Definition	The geographical origin of the sample as defined by latitude and longitude. The values should be reported in decimal degrees and in WGS84 system.
Defined By
	Required: Yes — Repeatable: Nohttp://gensc.org/ns/mixs/lat_lon, 1..1
Examples	7.11 -110.5

MIxS Investigation Vocabulary

Index to MIxS Investigation Vocabulary

By label: experimental factor • investigation type • project name • submitted to insdc

By concept name: mixs:experimental factor • mixs:investigation type • mixs:project name • mixs:submitted to insdc

Concept definitions in MIxS Investigation Vocabulary

Concept Name:	mixs:experimental factor
Normative URI	http://gensc.org/ns/mixs/experimental_factor
Label	experimental factor
Definition	Experimental factors are essentially the variable aspects of an experiment design which can be used to describe an experiment, or set of experiments, in an increasingly detailed manner. This field accepts ontology terms from Experimental Factor Ontology (EFO) and/or Ontology for Biomedical Investigations (OBI). For a browser of EFO (v 2.43) terms, please see http://purl.bioontology.org/ontology/EFO; for a browser of OBI (v 2013-10-25) terms please see http://purl.bioontology.org/ontology/OBI
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:investigation type
Normative URI	http://gensc.org/ns/mixs/investigation_type
Label	investigation type
Definition	Nucleic Acid Sequence Report is the root element of all MIGS/MIMS compliant reports as standardized by Genomic Standards Consortium. This field is either eukaryote,bacteria,virus,plasmid,organelle, metagenome,mimarks-survey, or mimarks-specimen
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:project name
Normative URI	http://gensc.org/ns/mixs/project_name
Label	project name
Definition	Name of the project within which the sequencing was organized
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/project_name,
Concept Name:	mixs:submitted to insdc
Normative URI	http://gensc.org/ns/mixs/submitted_to_insdc
Label	submitted to insdc
Definition	Depending on the study (large-scale e.g. done with next generation sequencing technology, or small-scale) sequences have to be submitted to SRA (Sequence Read Archive), DRA (DDBJ Read Archive) or via the classical Webin/Sequin systems to Genbank, ENA and DDBJ. Although this field is mandatory, it is meant as a self-test field, therefore it is not necessary to include this field in contextual data submitted to databases
Defined By
	Required: No — Repeatable: No

MIxS Nucleic Acid Sequence Source Vocabulary

Index to MIxS Nucleic Acid Sequence Source Vocabulary

By label: encoded traits • estimated Size • extrachromosomal elements • health or disease status of specific host at time of collection • host specificity or range • isolation and growth condition • known pathogenicity • number of replicons • observed biotic relationship • ploidy • propagation • reference for biomaterial • relationship to oxygen • sample collection device or method • sample material processing • sample size • source material identifiers • specific host • subspecific genetic lineage • trophic level

By concept name: mixs:biotic relationship • mixs:encoded traits • mixs:estimated size • mixs:extrachrom elements • mixs:health disease stat • mixs:host spec range • mixs:isol growth condt • mixs:num replicons • mixs:pathogenicity • mixs:ploidy • mixs:propagation • mixs:ref biomaterial • mixs:rel to oxygen • mixs:samp collect device • mixs:samp mat process • mixs:samp size • mixs:source mat id • mixs:specific host • mixs:subspecf gen lin • mixs:trophic level

Concept definitions in MIxS Nucleic Acid Sequence Source Vocabulary

Concept Name:	mixs:biotic relationship
Normative URI	http://gensc.org/ns/mixs/biotic_relationship
Label	observed biotic relationship
Definition	Is it free-living or in a host and if the latter what type of relationship is observed
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:encoded traits
Normative URI	http://gensc.org/ns/mixs/encoded_traits
Label	encoded traits
Definition	Should include key traits like antibiotic resistance or xenobiotic degradation phenotypes for plasmids, converting genes for phage
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:estimated size
Normative URI	http://gensc.org/ns/mixs/estimated_size
Label	estimated Size
Definition	The estimated size of the genome prior to sequencing. Of particular importance in the sequencing of (eukaryotic) genome which could remain in draft form for a long or unspecified period.
Defined By
	Required: No — Repeatable: No
Examples	300000 bp
Concept Name:	mixs:extrachrom elements
Normative URI	http://gensc.org/ns/mixs/extrachrom_elements
Label	extrachromosomal elements
Definition	Do plasmids exist of significant phenotypic consequence (e.g. ones that determine virulence or antibiotic resistance). Megaplasmids? Other plasmids (borrelia has 15+ plasmids)
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:health disease stat
Normative URI	http://gensc.org/ns/mixs/health_disease_stat
Label	health or disease status of specific host at time of collection
Definition	Health or disease status of specific host at time of collection. This field accepts PATO (v 2013-10-28) terms, for a browser please see http://purl.bioontology.org/ontology/PATO
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:host spec range
Normative URI	http://gensc.org/ns/mixs/host_spec_range
Label	host specificity or range
Definition	The NCBI taxonomy identifier of the specific host if it is known
Defined By
	Required: No — Repeatable: No
Examples	124
Concept Name:	mixs:isol growth condt
Normative URI	http://gensc.org/ns/mixs/isol_growth_condt
Label	isolation and growth condition
Definition	Publication reference in the form of pubmed ID (pmid), digital object identifier (doi) or url for isolation and growth condition specifications of the organism/material
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:num replicons
Normative URI	http://gensc.org/ns/mixs/num_replicons
Label	number of replicons
Definition	Reports the number of replicons in a nuclear genome of eukaryotes, in the genome of a bacterium or archaea or the number of segments in a segmented virus. Always applied to the haploid chromosome count of a eukaryote
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:pathogenicity
Normative URI	http://gensc.org/ns/mixs/pathogenicity
Label	known pathogenicity
Definition	To what is the entity pathogenic.
Defined By
	Required: No — Repeatable: No
Examples	human, animal, plant, fungi, bacteria
Concept Name:	mixs:ploidy
Normative URI	http://gensc.org/ns/mixs/ploidy
Label	ploidy
Definition	The ploidy level of the genome (e.g. allopolyploid, haploid, diploid, triploid, tetraploid). It has implications for the downstream study of duplicated gene and regions of the genomes (and perhaps for difficulties in assembly). For terms, please select terms listed under class ploidy (PATO:001374) of Phenotypic Quality Ontology (PATO), and for a browser of PATO (v 2013-10-28) please refer to http://purl.bioontology.org/ontology/PATO
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/ploidy,
Examples	allopolyploid, polyploid
Concept Name:	mixs:propagation
Normative URI	http://gensc.org/ns/mixs/propagation
Label	propagation
Definition	This field is specific to different taxa. For phages: lytic/lysogenic, for plasmids: incompatibility group (Note: there is the strong opinion to name phage propagation obligately lytic or temperate, therefore we also give this choice
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/propagation,
Concept Name:	mixs:ref biomaterial
Normative URI	http://gensc.org/ns/mixs/ref_biomaterial
Label	reference for biomaterial
Definition	primary publication if isolated before genome publication; otherwise, primary genome report
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:rel to oxygen
Normative URI	http://gensc.org/ns/mixs/rel_to_oxygen
Label	relationship to oxygen
Definition	Is this organism an aerobe, anaerobe? Please note that aerobic and anaerobic are valid descriptors for microbial environments
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:samp collect device
Normative URI	http://gensc.org/ns/mixs/samp_collect_device
Label	sample collection device or method
Definition	The method or device employed for collecting the sample
Defined By
	Required: No — Repeatable: No
Examples	biopsy, niskin bottle, push core
Concept Name:	mixs:samp mat process
Normative URI	http://gensc.org/ns/mixs/samp_mat_process
Label	sample material processing
Definition	Any processing applied to the sample during or after retrieving the sample from environment. This field accepts OBI, for a browser of OBI (v 2013-10-25) terms please see http://purl.bioontology.org/ontology/OBI
Defined By
	Required: No — Repeatable: No
Examples	filtering of seawater, storing samples in ethanol
Concept Name:	mixs:samp size
Normative URI	http://gensc.org/ns/mixs/samp_size
Label	sample size
Definition	Amount or size of sample (volume, mass or area) that was collected
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:source mat id
Normative URI	http://gensc.org/ns/mixs/source_mat_id
Label	source material identifiers
Definition	A unique identifier assigned to a material sample (as defined by http://rs.tdwg.org/dwc/terms/materialSampleID, and as opposed to a particular digital record of a material sample) used for extracting nucleic acids, and subsequent sequencing. The identifier can refer either to the original material collected or to any derived sub-samples. The INSDC qualifiers /specimen_voucher, /bio_material, or /culture_collection may or may not share the same value as the source_mat_id field. For instance, the /specimen_voucher qualifier and source_mat_id may both contain 'UAM:Herps:14' , referring to both the specimen voucher and sampled tissue with the same identifier. However, the /culture_collection qualifier may refer to a value from an initial culture (e.g. ATCC:11775) while source_mat_id would refer to an identifier from some derived culture from which the nucleic acids were extracted (e.g. xatc123 or ark:/2154/R2)
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:specific host
Normative URI	http://gensc.org/ns/mixs/specific_host
Label	specific host
Definition	If there is a host involved, please provide its taxid (or environmental if not actually isolated from the dead or alive host - i.e. pathogen could be isolated from a swipe of a bench etc) and report whether it is a laboratory or natural host). From this we can calculate any number of groupings of hosts (e.g. animal vs plant, all fish hosts, etc)
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:subspecf gen lin
Normative URI	http://gensc.org/ns/mixs/subspecf_gen_lin
Label	subspecific genetic lineage
Definition	This should provide further information about the genetic distinctness of this lineage by recording additional information i.e biovar, serovar, serotype, biovar, or any relevant genetic typing schemes like Group I plasmid. It can also contain alternative taxonomic information
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:trophic level
Normative URI	http://gensc.org/ns/mixs/trophic_level
Label	trophic level
Definition	Trophic levels are the feeding position in a food chain. Microbes can be a range of producers (e.g. chemolithotroph)
Defined By
	Required: No — Repeatable: No

MIxS Sequencing

Index to MIxS Sequencing

By label: adapters • annotation source • assembly • assembly name • chimera check • finishing strategy • library construction method • library reads sequenced • library screening strategy • library size • library vector • multiplex identifiers • nucleic acid amplification • nucleic acid extraction • pcr conditions • pcr primers • relevant electronic resources • relevant standard operating procedures • sequence quality check • sequencing method • target gene • target subfragment

By concept name: mixs:adapters • mixs:annot source • mixs:assembly • mixs:assembly name • mixs:chimera check • mixs:finishing strategy • mixs:lib const meth • mixs:lib reads seqd • mixs:lib screen • mixs:lib size • mixs:lib vector • mixs:mid • mixs:nucl acid amp • mixs:nucl acid ext • mixs:pcr cond • mixs:pcr primers • mixs:seq meth • mixs:seq quality check • mixs:sop • mixs:target gene • mixs:target subfragment • mixs:url

Concept definitions in MIxS Sequencing

Concept Name:	mixs:adapters
Normative URI	http://gensc.org/ns/mixs/adapters
Label	adapters
Definition	Adapters provide priming sequences for both amplification and sequencing of the sample-library fragments. Both adapters should be reported; in uppercase letters
Defined By
	Required: No — Repeatable: Yeshttp://gensc.org/ns/mixs/adapters, 0..n
Concept Name:	mixs:annot source
Normative URI	http://gensc.org/ns/mixs/annot_source
Label	annotation source
Definition	For cases where annotation was provided by a community jamboree or model organism database rather than by a specific submitter
Defined By
	Required: No — Repeatable: Yes
Concept Name:	mixs:assembly
Normative URI	http://gensc.org/ns/mixs/assembly
Label	assembly
Definition	How was the assembly done (e.g. with a text based assembler like phrap or a flowgram assembler); estimated error rate associated with the finished sequences (e.g. error rate of 1 in 1000 bp); and the method of calculation
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/assembly, 0..1
Concept Name:	mixs:assembly name
Normative URI	http://gensc.org/ns/mixs/assembly_name
Label	assembly name
Definition	Name/version of the assembly provided by the submitter that is used in the genome browsers and in the community
Defined By
	Required: No — Repeatable: No
Examples	HuRef, JCVI_ISG_i3_1.0
Concept Name:	mixs:chimera check
Normative URI	http://gensc.org/ns/mixs/chimera_check
Label	chimera check
Definition	A chimeric sequence, or chimera for short, is a sequence comprised of two or more phylogenetically distinct parent sequences. Chimeras are usually PCR artifacts thought to occur when a prematurely terminated amplicon reanneals to a foreign DNA strand and is copied to completion in the following PCR cycles. The point at which the chimeric sequence changes from one parent to the next is called the breakpoint or conversion point
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:finishing strategy
Normative URI	http://gensc.org/ns/mixs/finishing_strategy
Label	finishing strategy
Definition	Was the genome project intended to produce a complete or draft genome, Coverage, the fold coverage of the sequencing expressed as 2x, 3x, 18x etc, and how many contigs were produced for the genome
Defined By
	Required: No — Repeatable: Yes
Concept Name:	mixs:lib const meth
Normative URI	http://gensc.org/ns/mixs/lib_const_meth
Label	library construction method
Definition	Library construction method used for clone libraries
Defined By
	Required: No — Repeatable: No
Examples	paired-end,single,vector
Concept Name:	mixs:lib reads seqd
Normative URI	http://gensc.org/ns/mixs/lib_reads_seqd
Label	library reads sequenced
Definition	Total number of clones sequenced from the library
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:lib screen
Normative URI	http://gensc.org/ns/mixs/lib_screen
Label	library screening strategy
Definition	Specific enrichment or screening methods applied before and/or after creating clone libraries in order to select a specific group of sequences
Defined By
	Required: No — Repeatable: No
Examples	enriched, screened, normalized
Concept Name:	mixs:lib size
Normative URI	http://gensc.org/ns/mixs/lib_size
Label	library size
Definition	Total number of clones in the library prepared for the project
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/lib_size, 0..1
Concept Name:	mixs:lib vector
Normative URI	http://gensc.org/ns/mixs/lib_vector
Label	library vector
Definition	Cloning vector type(s) used in construction of libraries
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:mid
Normative URI	http://gensc.org/ns/mixs/mid
Label	multiplex identifiers
Definition	Molecular barcodes, called Multiplex Identifiers (MIDs), that are used to specifically tag unique samples in a sequencing run. Sequence should be reported in uppercase letters
Defined By
	Required: No — Repeatable: Yeshttp://gensc.org/ns/mixs/mid, 0..n
Concept Name:	mixs:nucl acid amp
Normative URI	http://gensc.org/ns/mixs/nucl_acid_amp
Label	nucleic acid amplification
Definition	Link to a literature reference, electronic resource or a standard operating procedure (SOP)
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:nucl acid ext
Normative URI	http://gensc.org/ns/mixs/nucl_acid_ext
Label	nucleic acid extraction
Definition	Link to a literature reference, electronic resource or a standard operating procedure (SOP)
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:pcr cond
Normative URI	http://gensc.org/ns/mixs/pcr_cond
Label	pcr conditions
Definition	Description of reaction conditions and components for PCR in the form of 'initial denaturation:94degC_1.5min; annealing=...'
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/pcr_cond,
Concept Name:	mixs:pcr primers
Normative URI	http://gensc.org/ns/mixs/pcr_primers
Label	pcr primers
Definition	PCR primers that were used to amplify the sequence of the targeted gene, locus or subfragment. This field should contain all the primers used for a single PCR reaction if multiple forward or reverse primers are present in a single PCR reaction. The primer sequence should be reported in uppercase letters
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/pcr_primers,
Concept Name:	mixs:seq meth
Normative URI	http://gensc.org/ns/mixs/seq_meth
Label	sequencing method
Definition	Sequencing method used; e.g. Sanger, pyrosequencing, ABI-solid
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/seq_meth,
Examples	Sanger dideoxysequencing, pyrosequencing, polony
Concept Name:	mixs:seq quality check
Normative URI	http://gensc.org/ns/mixs/seq_quality_check
Label	sequence quality check
Definition	Indicate if the sequence has been called by automatic systems (none) or undergone a manual editing procedure (e.g. by inspecting the raw data or chromatograms). Applied only for sequences that are not submitted to SRA or DRA e.g. none or manually edited
Defined By
	Required: No — Repeatable: Yes
Concept Name:	mixs:sop
Normative URI	http://gensc.org/ns/mixs/sop
Label	relevant standard operating procedures
Definition	Standard operating procedures used in assembly and/or annotation of genomes, metagenomes or environmental sequences
Defined By
	Required: No — Repeatable: Yeshttp://gensc.org/ns/mixs/sop, 0..n
Concept Name:	mixs:target gene
Normative URI	http://gensc.org/ns/mixs/target_gene
Label	target gene
Definition	Targeted gene or locus name for marker gene studies
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/target_gene,
Examples	16S rRNA, 18S rRNA, nif, amoA, rpo
Concept Name:	mixs:target subfragment
Normative URI	http://gensc.org/ns/mixs/target_subfragment
Label	target subfragment
Definition	Name of subfragment of a gene or locus. Important to e.g. identify special regions on marker genes like V6 on 16S rRNA
Defined By
	Required: No — Repeatable: No
Examples	V6, V9, ITS
Concept Name:	mixs:url
Normative URI	http://gensc.org/ns/mixs/url
Label	relevant electronic resources
Definition	links to any additional resources
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/url,

mixs:air

Index to mixs:air

By label: altitude • altitude • barometric pressure • carbon dioxide • carbon monoxide • chemical administration • elevation • humidity • methane • miscellaneous parameter • organism count • oxygen • oxygenation status of sample • perturbation • pollutants • respirable particulate matter • sample salinity • sample storage duration • sample storage location • sample storage temperature • sample volume or weight for DNA extraction • solar irradiance • temperature • ventilation rate • ventilation type • volatile organic compounds • wind direction • wind speed

By concept name: mixs:alt • mixs:altitude • mixs:barometric press • mixs:carb dioxide • mixs:carb monoxide • mixs:chem administration • mixs:elev • mixs:humidity • mixs:methane • mixs:misc param • mixs:organism count • mixs:oxy stat samp • mixs:oxygen • mixs:perturbation • mixs:pollutants • mixs:resp part matter • mixs:samp salinity • mixs:samp store dur • mixs:samp store loc • mixs:samp store temp • mixs:samp vol we dna ext • mixs:solar irradiance • mixs:temp • mixs:ventilation rate • mixs:ventilation type • mixs:volatile org comp • mixs:wind direction • mixs:wind speed

Concept definitions in mixs:air

Concept Name:	mixs:alt
Normative URI	http://gensc.org/ns/mixs/alt
Label	altitude
Definition	the altitude of the sample is the vertical distance between Earth's surface above sea level and the sampled position in the air
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/alt,
Concept Name:	mixs:altitude
Normative URI	http://gensc.org/ns/mixs/altitude
Label	altitude
Definition	the altitude of the sample is the vertical distance between Earth's surface above sea level and the sampled position in the air
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/altitude,
Examples	1 meter
Concept Name:	mixs:barometric press
Normative URI	http://gensc.org/ns/mixs/barometric_press
Label	barometric pressure
Definition	force per unit area exerted against a surface by the weight of air above that surface
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:carb dioxide
Normative URI	http://gensc.org/ns/mixs/carb_dioxide
Label	carbon dioxide
Definition	carbon dioxide (gas) amount or concentration at the time of sampling
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/carb_dioxide,
Concept Name:	mixs:carb monoxide
Normative URI	http://gensc.org/ns/mixs/carb_monoxide
Label	carbon monoxide
Definition	carbon monoxide (gas) amount or concentration at the time of sampling
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:chem administration
Normative URI	http://gensc.org/ns/mixs/chem_administration
Label	chemical administration
Definition	list of chemical compounds administered to the host or site where sampling occurred, and when (e.g. antibiotics, N fertilizer, air filter); can include multiple compounds. For Chemical Entities of Biological Interest ontology (CHEBI) (v 111), http://purl.bioontology.org/ontology/CHEBI
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:elev
Normative URI	http://gensc.org/ns/mixs/elev
Label	elevation
Definition	the elevation of the sampling site as measured by the vertical distance from mean sea level
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/elev,
Concept Name:	mixs:humidity
Normative URI	http://gensc.org/ns/mixs/humidity
Label	humidity
Definition	amount of water vapour in the air, at the time of sampling
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/humidity,
Concept Name:	mixs:methane
Normative URI	http://gensc.org/ns/mixs/methane
Label	methane
Definition	methane (gas) amount or concentration at the time of sampling
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/methane,
Concept Name:	mixs:misc param
Normative URI	http://gensc.org/ns/mixs/misc_param
Label	miscellaneous parameter
Definition	any other measurement performed or parameter collected, that is not listed here
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/misc_param,
Concept Name:	mixs:organism count
Normative URI	http://gensc.org/ns/mixs/organism_count
Label	organism count
Definition	total count of any organism per gram or volume of sample, should include name of organism followed by count; can include multiple organism counts
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:oxy stat samp
Normative URI	http://gensc.org/ns/mixs/oxy_stat_samp
Label	oxygenation status of sample
Definition	oxygenation status of sample
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:oxygen
Normative URI	http://gensc.org/ns/mixs/oxygen
Label	oxygen
Definition	oxygen (gas) amount or concentration at the time of sampling
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/oxygen,
Concept Name:	mixs:perturbation
Normative URI	http://gensc.org/ns/mixs/perturbation
Label	perturbation
Definition	type of perturbation, e.g. chemical administration, physical disturbance, etc., coupled with time that perturbation occurred; can include multiple perturbation types
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/perturbation,
Concept Name:	mixs:pollutants
Normative URI	http://gensc.org/ns/mixs/pollutants
Label	pollutants
Definition	pollutant types and, amount or concentrations measured at the time of sampling; can report multiple pollutants by entering numeric values preceded by name of pollutant
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/pollutants,
Concept Name:	mixs:resp part matter
Normative URI	http://gensc.org/ns/mixs/resp_part_matter
Label	respirable particulate matter
Definition	concentration of substances that remain suspended in the air, and comprise mixtures of organic and inorganic substances (PM10 and PM2.5); can report multiple PM's by entering numeric values preceded by name of PM
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:samp salinity
Normative URI	http://gensc.org/ns/mixs/samp_salinity
Label	sample salinity
Definition	salinity of sample, i.e. measure of total salt concentration
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:samp store dur
Normative URI	http://gensc.org/ns/mixs/samp_store_dur
Label	sample storage duration
Definition	duration for which sample was stored
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:samp store loc
Normative URI	http://gensc.org/ns/mixs/samp_store_loc
Label	sample storage location
Definition	location at which sample was stored, usually name of a specific freezer/room
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:samp store temp
Normative URI	http://gensc.org/ns/mixs/samp_store_temp
Label	sample storage temperature
Definition	temperature at which sample was stored, e.g. -80 degree Celsius
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:samp vol we dna ext
Normative URI	http://gensc.org/ns/mixs/samp_vol_we_dna_ext
Label	sample volume or weight for DNA extraction
Definition	volume (mL) or weight (g) of sample processed for DNA extraction
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:solar irradiance
Normative URI	http://gensc.org/ns/mixs/solar_irradiance
Label	solar irradiance
Definition	the amount of solar energy that arrives at a specific area of a surface during a specific time interval
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:temp
Normative URI	http://gensc.org/ns/mixs/temp
Label	temperature
Definition	temperature of the sample at time of sampling
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/temp,
Concept Name:	mixs:ventilation rate
Normative URI	http://gensc.org/ns/mixs/ventilation_rate
Label	ventilation rate
Definition	ventilation rate of the system in the sampled premises
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:ventilation type
Normative URI	http://gensc.org/ns/mixs/ventilation_type
Label	ventilation type
Definition	ventilation system used in the sampled premises
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:volatile org comp
Normative URI	http://gensc.org/ns/mixs/volatile_org_comp
Label	volatile organic compounds
Definition	concentration of carbon-based chemicals that easily evaporate at room temperature; can report multiple volatile organic compounds by entering numeric values preceded by name of compound
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:wind direction
Normative URI	http://gensc.org/ns/mixs/wind_direction
Label	wind direction
Definition	wind direction is the direction from which a wind originates
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:wind speed
Normative URI	http://gensc.org/ns/mixs/wind_speed
Label	wind speed
Definition	speed of wind measured at the time of sampling
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/wind_speed,

mixs:built environment

Index to mixs:built environment

By label: absolute air humidity • building occupancy type • building setting • carbon dioxide • dew point • filter type • heating and cooling system type • indoor space • indoor surface • light type • occupancy at sampling • occupant density at sampling • organism count • relative air humidity • sample size sorting method • space typical state • substructure type • surface humidity • surface material • surface moisture • surface moisture pH • surface temperature • surface-air contaminant • typical occupant density • ventilation type

By concept name: mixs:abs air humidity • mixs:build occup type • mixs:building setting • mixs:carb dioxide • mixs:dew point • mixs:filter type • mixs:heat cool type • mixs:indoor space • mixs:indoor surf • mixs:light type • mixs:occup samp • mixs:occupant dens samp • mixs:organism count • mixs:rel air humidity • mixs:samp sort meth • mixs:space typ state • mixs:substructure type • mixs:surf air cont • mixs:surf humidity • mixs:surf material • mixs:surf moisture • mixs:surf moisture ph • mixs:surf temp • mixs:typ occupant dens • mixs:ventilation type

Concept definitions in mixs:built environment

Concept Name:	mixs:abs air humidity
Normative URI	http://gensc.org/ns/mixs/abs_air_humidity
Label	absolute air humidity
Definition	actual mass of water vapor - mh20 - present in the air water vapor mixture
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:build occup type
Normative URI	http://gensc.org/ns/mixs/build_occup_type
Label	building occupancy type
Definition	the primary function for which a building or discrete part of a building is intended to be used
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:building setting
Normative URI	http://gensc.org/ns/mixs/building_setting
Label	building setting
Definition	a location (geography) where a building is set
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:carb dioxide
Normative URI	http://gensc.org/ns/mixs/carb_dioxide
Label	carbon dioxide
Definition	carbon dioxide (gas) amount or concentration at the time of sampling
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/carb_dioxide,
Concept Name:	mixs:dew point
Normative URI	http://gensc.org/ns/mixs/dew_point
Label	dew point
Definition	the temperature to which a given parcel of humid air must be cooled, at constant barometric pressure, for water vapor to condense into water.
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/dew_point,
Concept Name:	mixs:filter type
Normative URI	http://gensc.org/ns/mixs/filter_type
Label	filter type
Definition	a device which removes solid particulates or airborne molecular contaminants
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/filter_type,
Concept Name:	mixs:heat cool type
Normative URI	http://gensc.org/ns/mixs/heat_cool_type
Label	heating and cooling system type
Definition	methods of conditioning or heating a room or building
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:indoor space
Normative URI	http://gensc.org/ns/mixs/indoor_space
Label	indoor space
Definition	a distinguishable space within a structure, the purpose for which discrete areas of a building is used
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/indoor_space,
Concept Name:	mixs:indoor surf
Normative URI	http://gensc.org/ns/mixs/indoor_surf
Label	indoor surface
Definition	type of indoor surface
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/indoor_surf,
Concept Name:	mixs:light type
Normative URI	http://gensc.org/ns/mixs/light_type
Label	light type
Definition	application of light to achieve some practical or aesthetic effect. Lighting includes the use of both artificial light sources such as lamps and light fixtures, as well as natural illumination by capturing daylight. Can also include absence of light
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/light_type,
Concept Name:	mixs:occup samp
Normative URI	http://gensc.org/ns/mixs/occup_samp
Label	occupancy at sampling
Definition	number of occupants present at time of sample within the given space
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/occup_samp,
Concept Name:	mixs:occupant dens samp
Normative URI	http://gensc.org/ns/mixs/occupant_dens_samp
Label	occupant density at sampling
Definition	average number of occupants at time of sampling per square footage
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:organism count
Normative URI	http://gensc.org/ns/mixs/organism_count
Label	organism count
Definition	total count of any organism per gram or volume of sample, should include name of organism followed by count; can include multiple organism counts
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:rel air humidity
Normative URI	http://gensc.org/ns/mixs/rel_air_humidity
Label	relative air humidity
Definition	partial vapor and air pressure, density of the vapor and air, or by the actual mass of the vapor and air
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:samp sort meth
Normative URI	http://gensc.org/ns/mixs/samp_sort_meth
Label	sample size sorting method
Definition	method by which samples are sorted
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:space typ state
Normative URI	http://gensc.org/ns/mixs/space_typ_state
Label	space typical state
Definition	customary or normal state of the space
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:substructure type
Normative URI	http://gensc.org/ns/mixs/substructure_type
Label	substructure type
Definition	the substructure or under building is that largely hidden section of the building which is built off the foundations to the ground floor level
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:surf air cont
Normative URI	http://gensc.org/ns/mixs/surf_air_cont
Label	surface-air contaminant
Definition	contaminant identified on surface
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:surf humidity
Normative URI	http://gensc.org/ns/mixs/surf_humidity
Label	surface humidity
Definition	surfaces: water activity as a function of air and material moisture
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:surf material
Normative URI	http://gensc.org/ns/mixs/surf_material
Label	surface material
Definition	surface materials at the point of sampling
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:surf moisture
Normative URI	http://gensc.org/ns/mixs/surf_moisture
Label	surface moisture
Definition	water held on a surface
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:surf moisture ph
Normative URI	http://gensc.org/ns/mixs/surf_moisture_ph
Label	surface moisture pH
Definition	pH measurement of surface
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:surf temp
Normative URI	http://gensc.org/ns/mixs/surf_temp
Label	surface temperature
Definition	temperature of the surface at the time of sampling
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/surf_temp,
Concept Name:	mixs:typ occupant dens
Normative URI	http://gensc.org/ns/mixs/typ_occupant_dens
Label	typical occupant density
Definition	customary or normal density of occupants
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:ventilation type
Normative URI	http://gensc.org/ns/mixs/ventilation_type
Label	ventilation type
Definition	ventilation system used in the sampled premises
Defined By
	Required: No — Repeatable: No

mixs:host-associated

Index to mixs:host-associated

By label: altitude • chemical administration • elevation • geographic location (depth) • gravidity • host age • host blood pressure diastolic • host blood pressure systolic • host body habitat • host body product • host body site • host body temperature • host color • host common name • host diet • host disease status • host dry mass • host family relationship • host genotype • host growth conditions • host height • host infra-specific name • host infra-specific rank • host last meal • host length • host life stage • host phenotype • host sex • host shape • host subject id • host substrate • host taxid • host total mass • miscellaneous parameter • organism count • oxygenation status of sample • perturbation • sample salinity • sample storage duration • sample storage location • sample storage temperature • sample volume or weight for DNA extraction • temperature

By concept name: mixs:alt • mixs:chem administration • mixs:depth • mixs:elev • mixs:gravidity • mixs:host age • mixs:host blood press diast • mixs:host blood press syst • mixs:host body habitat • mixs:host body product • mixs:host body site • mixs:host body temp • mixs:host color • mixs:host common name • mixs:host diet • mixs:host disease stat • mixs:host dry mass • mixs:host family relationship • mixs:host genotype • mixs:host growth cond • mixs:host height • mixs:host infra specific name • mixs:host infra specific rank • mixs:host last meal • mixs:host length • mixs:host life stage • mixs:host phenotype • mixs:host sex • mixs:host shape • mixs:host subject id • mixs:host substrate • mixs:host taxid • mixs:host tot mass • mixs:misc param • mixs:organism count • mixs:oxy stat samp • mixs:perturbation • mixs:samp salinity • mixs:samp store dur • mixs:samp store loc • mixs:samp store temp • mixs:samp vol we dna ext • mixs:temp

Concept definitions in mixs:host-associated

Concept Name:	mixs:alt
Normative URI	http://gensc.org/ns/mixs/alt
Label	altitude
Definition	the altitude of the sample is the vertical distance between Earth's surface above sea level and the sampled position in the air
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/alt,
Concept Name:	mixs:chem administration
Normative URI	http://gensc.org/ns/mixs/chem_administration
Label	chemical administration
Definition	list of chemical compounds administered to the host or site where sampling occurred, and when (e.g. antibiotics, N fertilizer, air filter); can include multiple compounds. For Chemical Entities of Biological Interest ontology (CHEBI) (v 111), http://purl.bioontology.org/ontology/CHEBI
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:depth
Normative URI	http://gensc.org/ns/mixs/depth
Label	geographic location (depth)
Definition	Depth is defined as the vertical distance below local surface, e.g. for sediment or soil samples depth is measured from sediment or soil surface, respectively. Depth can be reported as an interval for subsurface samples.
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/depth, 0..1
Examples	10.3 m
Concept Name:	mixs:elev
Normative URI	http://gensc.org/ns/mixs/elev
Label	elevation
Definition	the elevation of the sampling site as measured by the vertical distance from mean sea level
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/elev,
Concept Name:	mixs:gravidity
Normative URI	http://gensc.org/ns/mixs/gravidity
Label	gravidity
Definition	whether or not subject is gravid, and if yes date due or date post-conception, specifying which is used
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/gravidity,
Concept Name:	mixs:host age
Normative URI	http://gensc.org/ns/mixs/host_age
Label	host age
Definition	age of host at the time of sampling; relevant scale depends on species and study, e.g. could be seconds for amoebae or centuries for trees
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/host_age,
Concept Name:	mixs:host blood press diast
Normative URI	http://gensc.org/ns/mixs/host_blood_press_diast
Label	host blood pressure diastolic
Definition	resting diastolic blood pressure, measured as mm mercury
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:host blood press syst
Normative URI	http://gensc.org/ns/mixs/host_blood_press_syst
Label	host blood pressure systolic
Definition	resting systolic blood pressure, measured as mm mercury
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:host body habitat
Normative URI	http://gensc.org/ns/mixs/host_body_habitat
Label	host body habitat
Definition	original body habitat where the sample was obtained from
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:host body product
Normative URI	http://gensc.org/ns/mixs/host_body_product
Label	host body product
Definition	substance produced by the body, e.g. stool, mucus, where the sample was obtained from. For Foundational Model of Anatomy Ontology (FMA) (v 3.1) terms, please see http://purl.bioontology.org/ontology/FMA
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:host body site
Normative URI	http://gensc.org/ns/mixs/host_body_site
Label	host body site
Definition	name of body site where the sample was obtained from, such as a specific organ or tissue (tongue, lung etc...). For Foundational Model of Anatomy Ontology (FMA) (v 3.1) terms, please see http://purl.bioontology.org/ontology/FMA
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:host body temp
Normative URI	http://gensc.org/ns/mixs/host_body_temp
Label	host body temperature
Definition	core body temperature of the host when sample was collected
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:host color
Normative URI	http://gensc.org/ns/mixs/host_color
Label	host color
Definition	the color of host
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/host_color,
Concept Name:	mixs:host common name
Normative URI	http://gensc.org/ns/mixs/host_common_name
Label	host common name
Definition	common name of the host, e.g. human
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:host diet
Normative URI	http://gensc.org/ns/mixs/host_diet
Label	host diet
Definition	type of diet depending on the host, for animals omnivore, herbivore etc., for humans high-fat, meditteranean etc.; can include multiple diet types
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/host_diet,
Concept Name:	mixs:host disease stat
Normative URI	http://gensc.org/ns/mixs/host_disease_stat
Label	host disease status
Definition	list of diseases with which the host has been diagnosed; can include multiple diagnoses. the value of the field depends on host; for humans the terms should be chosen from DO (Disease Ontology) at http://www.disease-ontology.org, other hosts are free text
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:host dry mass
Normative URI	http://gensc.org/ns/mixs/host_dry_mass
Label	host dry mass
Definition	measurement of dry mass
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:host family relationship
Normative URI	http://gensc.org/ns/mixs/host_family_relationship
Label	host family relationship
Definition	relationships to other hosts in the same study; can include multiple relationships
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:host genotype
Normative URI	http://gensc.org/ns/mixs/host_genotype
Label	host genotype
Definition	observed genotype
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:host growth cond
Normative URI	http://gensc.org/ns/mixs/host_growth_cond
Label	host growth conditions
Definition	literature reference giving growth conditions of the host
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:host height
Normative URI	http://gensc.org/ns/mixs/host_height
Label	host height
Definition	the height of subject
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/host_height,
Concept Name:	mixs:host infra specific name
Normative URI	http://gensc.org/ns/mixs/host_infra_specific_name
Label	host infra-specific name
Definition	taxonomic information about the host below subspecies level
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:host infra specific rank
Normative URI	http://gensc.org/ns/mixs/host_infra_specific_rank
Label	host infra-specific rank
Definition	taxonomic rank information about the host below subspecies level, such as variety, form, rank etc.
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:host last meal
Normative URI	http://gensc.org/ns/mixs/host_last_meal
Label	host last meal
Definition	content of last meal and time since feeding; can include multiple values
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:host length
Normative URI	http://gensc.org/ns/mixs/host_length
Label	host length
Definition	the length of subject
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/host_length,
Concept Name:	mixs:host life stage
Normative URI	http://gensc.org/ns/mixs/host_life_stage
Label	host life stage
Definition	description of life stage of host
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:host phenotype
Normative URI	http://gensc.org/ns/mixs/host_phenotype
Label	host phenotype
Definition	phenotype of host. For Phenotypic quality Ontology (PATO) (v 2013-10-28) terms, please see http://purl.bioontology.org/ontology/PATO
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:host sex
Normative URI	http://gensc.org/ns/mixs/host_sex
Label	host sex
Definition	physical sex of the host
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/host_sex,
Concept Name:	mixs:host shape
Normative URI	http://gensc.org/ns/mixs/host_shape
Label	host shape
Definition	morphological shape of host
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/host_shape,
Concept Name:	mixs:host subject id
Normative URI	http://gensc.org/ns/mixs/host_subject_id
Label	host subject id
Definition	a unique identifier by which each subject can be referred to, de-identified, e.g. #131
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:host substrate
Normative URI	http://gensc.org/ns/mixs/host_substrate
Label	host substrate
Definition	the growth substrate of the host
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:host taxid
Normative URI	http://gensc.org/ns/mixs/host_taxid
Label	host taxid
Definition	NCBI taxon id of the host, e.g. 9606
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/host_taxid,
Concept Name:	mixs:host tot mass
Normative URI	http://gensc.org/ns/mixs/host_tot_mass
Label	host total mass
Definition	total mass of the host at collection, the unit depends on host
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:misc param
Normative URI	http://gensc.org/ns/mixs/misc_param
Label	miscellaneous parameter
Definition	any other measurement performed or parameter collected, that is not listed here
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/misc_param,
Concept Name:	mixs:organism count
Normative URI	http://gensc.org/ns/mixs/organism_count
Label	organism count
Definition	total count of any organism per gram or volume of sample, should include name of organism followed by count; can include multiple organism counts
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:oxy stat samp
Normative URI	http://gensc.org/ns/mixs/oxy_stat_samp
Label	oxygenation status of sample
Definition	oxygenation status of sample
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:perturbation
Normative URI	http://gensc.org/ns/mixs/perturbation
Label	perturbation
Definition	type of perturbation, e.g. chemical administration, physical disturbance, etc., coupled with time that perturbation occurred; can include multiple perturbation types
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/perturbation,
Concept Name:	mixs:samp salinity
Normative URI	http://gensc.org/ns/mixs/samp_salinity
Label	sample salinity
Definition	salinity of sample, i.e. measure of total salt concentration
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:samp store dur
Normative URI	http://gensc.org/ns/mixs/samp_store_dur
Label	sample storage duration
Definition	duration for which sample was stored
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:samp store loc
Normative URI	http://gensc.org/ns/mixs/samp_store_loc
Label	sample storage location
Definition	location at which sample was stored, usually name of a specific freezer/room
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:samp store temp
Normative URI	http://gensc.org/ns/mixs/samp_store_temp
Label	sample storage temperature
Definition	temperature at which sample was stored, e.g. -80 degree Celsius
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:samp vol we dna ext
Normative URI	http://gensc.org/ns/mixs/samp_vol_we_dna_ext
Label	sample volume or weight for DNA extraction
Definition	volume (mL) or weight (g) of sample processed for DNA extraction
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:temp
Normative URI	http://gensc.org/ns/mixs/temp
Label	temperature
Definition	temperature of the sample at time of sampling
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/temp,

mixs:human-associated

Index to mixs:human-associated

By label: IHMC ethnicity • IHMC medication code • amniotic fluid/color • amniotic fluid/foetal health status • amniotic fluid/gestation state • amniotic fluid/maternal health status • blood/blood disorder • chemical administration • drug usage • host HIV status • host age • host body product • host body site • host body temperature • host body-mass index • host diet • host disease status • host family relationship • host genotype • host height • host last meal • host occupation • host phenotype • host pulse • host sex • host subject id • host total mass • lung/nose-throat disorder • lung/pulmonary disorder • major diet change in last six months • medical history performed • miscellaneous parameter • organism count • oxygenation status of sample • perturbation • presence of pets or farm animals • sample salinity • sample storage duration • sample storage location • sample storage temperature • sample volume or weight for DNA extraction • smoker • study completion status • temperature • travel outside the country in last six months • twin sibling presence • urine/collection method • urine/kidney disorder • urine/urogenital tract disorder • weight loss in last three months

By concept name: mixs:amniotic fluid color • mixs:blood blood disord • mixs:chem administration • mixs:diet last six month • mixs:drug usage • mixs:foetal health stat • mixs:gestation state • mixs:host age • mixs:host body mass index • mixs:host body product • mixs:host body site • mixs:host body temp • mixs:host diet • mixs:host disease stat • mixs:host family relationship • mixs:host genotype • mixs:host height • mixs:host hiv stat • mixs:host last meal • mixs:host occupation • mixs:host phenotype • mixs:host pulse • mixs:host sex • mixs:host subject id • mixs:host tot mass • mixs:ihmc ethnicity • mixs:ihmc medication code • mixs:kidney disord • mixs:maternal health stat • mixs:medic hist perform • mixs:misc param • mixs:nose throat disord • mixs:organism count • mixs:oxy stat samp • mixs:perturbation • mixs:pet farm animal • mixs:pulmonary disord • mixs:samp salinity • mixs:samp store dur • mixs:samp store loc • mixs:samp store temp • mixs:samp vol we dna ext • mixs:smoker • mixs:study complt stat • mixs:temp • mixs:travel out six month • mixs:twin sibling • mixs:urine collect meth • mixs:urogenit tract disor • mixs:weight loss 3 month

Concept definitions in mixs:human-associated

Concept Name:	mixs:amniotic fluid color
Normative URI	http://gensc.org/ns/mixs/amniotic_fluid_color
Label	amniotic fluid/color
Definition	specification of the color of the amniotic fluid sample
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:blood blood disord
Normative URI	http://gensc.org/ns/mixs/blood_blood_disord
Label	blood/blood disorder
Definition	history of blood disorders; can include multiple disorders
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:chem administration
Normative URI	http://gensc.org/ns/mixs/chem_administration
Label	chemical administration
Definition	list of chemical compounds administered to the host or site where sampling occurred, and when (e.g. antibiotics, N fertilizer, air filter); can include multiple compounds. For Chemical Entities of Biological Interest ontology (CHEBI) (v 111), http://purl.bioontology.org/ontology/CHEBI
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:diet last six month
Normative URI	http://gensc.org/ns/mixs/diet_last_six_month
Label	major diet change in last six months
Definition	specification of major diet changes in the last six months, if yes the change should be specified
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:drug usage
Normative URI	http://gensc.org/ns/mixs/drug_usage
Label	drug usage
Definition	any drug used by subject and the frequency of usage; can include multiple drugs used
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/drug_usage,
Concept Name:	mixs:foetal health stat
Normative URI	http://gensc.org/ns/mixs/foetal_health_stat
Label	amniotic fluid/foetal health status
Definition	specification of foetal health status, should also include abortion
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:gestation state
Normative URI	http://gensc.org/ns/mixs/gestation_state
Label	amniotic fluid/gestation state
Definition	specification of the gestation state
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:host age
Normative URI	http://gensc.org/ns/mixs/host_age
Label	host age
Definition	age of host at the time of sampling; relevant scale depends on species and study, e.g. could be seconds for amoebae or centuries for trees
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/host_age,
Concept Name:	mixs:host body mass index
Normative URI	http://gensc.org/ns/mixs/host_body_mass_index
Label	host body-mass index
Definition	body mass index, calculated as weight/(height)squared
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:host body product
Normative URI	http://gensc.org/ns/mixs/host_body_product
Label	host body product
Definition	substance produced by the body, e.g. stool, mucus, where the sample was obtained from. For Foundational Model of Anatomy Ontology (FMA) (v 3.1) terms, please see http://purl.bioontology.org/ontology/FMA
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:host body site
Normative URI	http://gensc.org/ns/mixs/host_body_site
Label	host body site
Definition	name of body site where the sample was obtained from, such as a specific organ or tissue (tongue, lung etc...). For Foundational Model of Anatomy Ontology (FMA) (v 3.1) terms, please see http://purl.bioontology.org/ontology/FMA
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:host body temp
Normative URI	http://gensc.org/ns/mixs/host_body_temp
Label	host body temperature
Definition	core body temperature of the host when sample was collected
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:host diet
Normative URI	http://gensc.org/ns/mixs/host_diet
Label	host diet
Definition	type of diet depending on the host, for animals omnivore, herbivore etc., for humans high-fat, meditteranean etc.; can include multiple diet types
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/host_diet,
Concept Name:	mixs:host disease stat
Normative URI	http://gensc.org/ns/mixs/host_disease_stat
Label	host disease status
Definition	list of diseases with which the host has been diagnosed; can include multiple diagnoses. the value of the field depends on host; for humans the terms should be chosen from DO (Disease Ontology) at http://www.disease-ontology.org, other hosts are free text
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:host family relationship
Normative URI	http://gensc.org/ns/mixs/host_family_relationship
Label	host family relationship
Definition	relationships to other hosts in the same study; can include multiple relationships
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:host genotype
Normative URI	http://gensc.org/ns/mixs/host_genotype
Label	host genotype
Definition	observed genotype
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:host height
Normative URI	http://gensc.org/ns/mixs/host_height
Label	host height
Definition	the height of subject
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/host_height,
Concept Name:	mixs:host hiv stat
Normative URI	http://gensc.org/ns/mixs/host_hiv_stat
Label	host HIV status
Definition	HIV status of subject, if yes HAART initiation status should also be indicated as [YES or NO]
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:host last meal
Normative URI	http://gensc.org/ns/mixs/host_last_meal
Label	host last meal
Definition	content of last meal and time since feeding; can include multiple values
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:host occupation
Normative URI	http://gensc.org/ns/mixs/host_occupation
Label	host occupation
Definition	most frequent job performed by subject
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:host phenotype
Normative URI	http://gensc.org/ns/mixs/host_phenotype
Label	host phenotype
Definition	phenotype of host. For Phenotypic quality Ontology (PATO) (v 2013-10-28) terms, please see http://purl.bioontology.org/ontology/PATO
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:host pulse
Normative URI	http://gensc.org/ns/mixs/host_pulse
Label	host pulse
Definition	resting pulse, measured as beats per minute
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/host_pulse,
Concept Name:	mixs:host sex
Normative URI	http://gensc.org/ns/mixs/host_sex
Label	host sex
Definition	physical sex of the host
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/host_sex,
Concept Name:	mixs:host subject id
Normative URI	http://gensc.org/ns/mixs/host_subject_id
Label	host subject id
Definition	a unique identifier by which each subject can be referred to, de-identified, e.g. #131
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:host tot mass
Normative URI	http://gensc.org/ns/mixs/host_tot_mass
Label	host total mass
Definition	total mass of the host at collection, the unit depends on host
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:ihmc ethnicity
Normative URI	http://gensc.org/ns/mixs/ihmc_ethnicity
Label	IHMC ethnicity
Definition	ethnicity of the subject
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:ihmc medication code
Normative URI	http://gensc.org/ns/mixs/ihmc_medication_code
Label	IHMC medication code
Definition	can include multiple medication codes
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:kidney disord
Normative URI	http://gensc.org/ns/mixs/kidney_disord
Label	urine/kidney disorder
Definition	history of kidney disorders; can include multiple disorders
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:maternal health stat
Normative URI	http://gensc.org/ns/mixs/maternal_health_stat
Label	amniotic fluid/maternal health status
Definition	specification of the maternal health status
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:medic hist perform
Normative URI	http://gensc.org/ns/mixs/medic_hist_perform
Label	medical history performed
Definition	whether full medical history was collected
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:misc param
Normative URI	http://gensc.org/ns/mixs/misc_param
Label	miscellaneous parameter
Definition	any other measurement performed or parameter collected, that is not listed here
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/misc_param,
Concept Name:	mixs:nose throat disord
Normative URI	http://gensc.org/ns/mixs/nose_throat_disord
Label	lung/nose-throat disorder
Definition	history of nose-throat disorders; can include multiple disorders
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:organism count
Normative URI	http://gensc.org/ns/mixs/organism_count
Label	organism count
Definition	total count of any organism per gram or volume of sample, should include name of organism followed by count; can include multiple organism counts
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:oxy stat samp
Normative URI	http://gensc.org/ns/mixs/oxy_stat_samp
Label	oxygenation status of sample
Definition	oxygenation status of sample
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:perturbation
Normative URI	http://gensc.org/ns/mixs/perturbation
Label	perturbation
Definition	type of perturbation, e.g. chemical administration, physical disturbance, etc., coupled with time that perturbation occurred; can include multiple perturbation types
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/perturbation,
Concept Name:	mixs:pet farm animal
Normative URI	http://gensc.org/ns/mixs/pet_farm_animal
Label	presence of pets or farm animals
Definition	specification of presence of pets or farm animals in the environment of subject, if yes the animals should be specified; can include multiple animals present
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:pulmonary disord
Normative URI	http://gensc.org/ns/mixs/pulmonary_disord
Label	lung/pulmonary disorder
Definition	history of pulmonary disorders; can include multiple disorders
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:samp salinity
Normative URI	http://gensc.org/ns/mixs/samp_salinity
Label	sample salinity
Definition	salinity of sample, i.e. measure of total salt concentration
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:samp store dur
Normative URI	http://gensc.org/ns/mixs/samp_store_dur
Label	sample storage duration
Definition	duration for which sample was stored
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:samp store loc
Normative URI	http://gensc.org/ns/mixs/samp_store_loc
Label	sample storage location
Definition	location at which sample was stored, usually name of a specific freezer/room
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:samp store temp
Normative URI	http://gensc.org/ns/mixs/samp_store_temp
Label	sample storage temperature
Definition	temperature at which sample was stored, e.g. -80 degree Celsius
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:samp vol we dna ext
Normative URI	http://gensc.org/ns/mixs/samp_vol_we_dna_ext
Label	sample volume or weight for DNA extraction
Definition	volume (mL) or weight (g) of sample processed for DNA extraction
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:smoker
Normative URI	http://gensc.org/ns/mixs/smoker
Label	smoker
Definition	specification of smoking status
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/smoker,
Concept Name:	mixs:study complt stat
Normative URI	http://gensc.org/ns/mixs/study_complt_stat
Label	study completion status
Definition	specification of study completion status, if no the reason should be specified
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:temp
Normative URI	http://gensc.org/ns/mixs/temp
Label	temperature
Definition	temperature of the sample at time of sampling
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/temp,
Concept Name:	mixs:travel out six month
Normative URI	http://gensc.org/ns/mixs/travel_out_six_month
Label	travel outside the country in last six months
Definition	specification of the countries travelled in the last six months; can include multiple travels
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:twin sibling
Normative URI	http://gensc.org/ns/mixs/twin_sibling
Label	twin sibling presence
Definition	specification of twin sibling presence
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/twin_sibling,
Concept Name:	mixs:urine collect meth
Normative URI	http://gensc.org/ns/mixs/urine_collect_meth
Label	urine/collection method
Definition	specification of urine collection method
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:urogenit tract disor
Normative URI	http://gensc.org/ns/mixs/urogenit_tract_disor
Label	urine/urogenital tract disorder
Definition	history of urogenitaltract disorders; can include multiple disorders
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:weight loss 3 month
Normative URI	http://gensc.org/ns/mixs/weight_loss_3_month
Label	weight loss in last three months
Definition	specification of weight loss in the last three months, if yes should be further specified to include amount of weight loss
Defined By
	Required: No — Repeatable: No

mixs:human-gut

Index to mixs:human-gut

By label: IHMC ethnicity • IHMC medication code • chemical administration • gastrointestinal tract disorder • host age • host body product • host body site • host body temperature • host body-mass index • host diet • host disease status • host family relationship • host genotype • host height • host last meal • host occupation • host phenotype • host pulse • host sex • host subject id • host total mass • liver disorder • medical history performed • miscellaneous parameter • organism count • oxygenation status of sample • perturbation • sample salinity • sample storage duration • sample storage location • sample storage temperature • sample volume or weight for DNA extraction • special diet • temperature

By concept name: mixs:chem administration • mixs:gastrointest disord • mixs:host age • mixs:host body mass index • mixs:host body product • mixs:host body site • mixs:host body temp • mixs:host diet • mixs:host disease stat • mixs:host family relationship • mixs:host genotype • mixs:host height • mixs:host last meal • mixs:host occupation • mixs:host phenotype • mixs:host pulse • mixs:host sex • mixs:host subject id • mixs:host tot mass • mixs:ihmc ethnicity • mixs:ihmc medication code • mixs:liver disord • mixs:medic hist perform • mixs:misc param • mixs:organism count • mixs:oxy stat samp • mixs:perturbation • mixs:samp salinity • mixs:samp store dur • mixs:samp store loc • mixs:samp store temp • mixs:samp vol we dna ext • mixs:special diet • mixs:temp

Concept definitions in mixs:human-gut

Concept Name:	mixs:chem administration
Normative URI	http://gensc.org/ns/mixs/chem_administration
Label	chemical administration
Definition	list of chemical compounds administered to the host or site where sampling occurred, and when (e.g. antibiotics, N fertilizer, air filter); can include multiple compounds. For Chemical Entities of Biological Interest ontology (CHEBI) (v 111), http://purl.bioontology.org/ontology/CHEBI
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:gastrointest disord
Normative URI	http://gensc.org/ns/mixs/gastrointest_disord
Label	gastrointestinal tract disorder
Definition	history of gastrointestinal tract disorders; can include multiple disorders
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:host age
Normative URI	http://gensc.org/ns/mixs/host_age
Label	host age
Definition	age of host at the time of sampling; relevant scale depends on species and study, e.g. could be seconds for amoebae or centuries for trees
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/host_age,
Concept Name:	mixs:host body mass index
Normative URI	http://gensc.org/ns/mixs/host_body_mass_index
Label	host body-mass index
Definition	body mass index, calculated as weight/(height)squared
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:host body product
Normative URI	http://gensc.org/ns/mixs/host_body_product
Label	host body product
Definition	substance produced by the body, e.g. stool, mucus, where the sample was obtained from. For Foundational Model of Anatomy Ontology (FMA) (v 3.1) terms, please see http://purl.bioontology.org/ontology/FMA
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:host body site
Normative URI	http://gensc.org/ns/mixs/host_body_site
Label	host body site
Definition	name of body site where the sample was obtained from, such as a specific organ or tissue (tongue, lung etc...). For Foundational Model of Anatomy Ontology (FMA) (v 3.1) terms, please see http://purl.bioontology.org/ontology/FMA
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:host body temp
Normative URI	http://gensc.org/ns/mixs/host_body_temp
Label	host body temperature
Definition	core body temperature of the host when sample was collected
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:host diet
Normative URI	http://gensc.org/ns/mixs/host_diet
Label	host diet
Definition	type of diet depending on the host, for animals omnivore, herbivore etc., for humans high-fat, meditteranean etc.; can include multiple diet types
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/host_diet,
Concept Name:	mixs:host disease stat
Normative URI	http://gensc.org/ns/mixs/host_disease_stat
Label	host disease status
Definition	list of diseases with which the host has been diagnosed; can include multiple diagnoses. the value of the field depends on host; for humans the terms should be chosen from DO (Disease Ontology) at http://www.disease-ontology.org, other hosts are free text
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:host family relationship
Normative URI	http://gensc.org/ns/mixs/host_family_relationship
Label	host family relationship
Definition	relationships to other hosts in the same study; can include multiple relationships
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:host genotype
Normative URI	http://gensc.org/ns/mixs/host_genotype
Label	host genotype
Definition	observed genotype
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:host height
Normative URI	http://gensc.org/ns/mixs/host_height
Label	host height
Definition	the height of subject
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/host_height,
Concept Name:	mixs:host last meal
Normative URI	http://gensc.org/ns/mixs/host_last_meal
Label	host last meal
Definition	content of last meal and time since feeding; can include multiple values
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:host occupation
Normative URI	http://gensc.org/ns/mixs/host_occupation
Label	host occupation
Definition	most frequent job performed by subject
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:host phenotype
Normative URI	http://gensc.org/ns/mixs/host_phenotype
Label	host phenotype
Definition	phenotype of host. For Phenotypic quality Ontology (PATO) (v 2013-10-28) terms, please see http://purl.bioontology.org/ontology/PATO
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:host pulse
Normative URI	http://gensc.org/ns/mixs/host_pulse
Label	host pulse
Definition	resting pulse, measured as beats per minute
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/host_pulse,
Concept Name:	mixs:host sex
Normative URI	http://gensc.org/ns/mixs/host_sex
Label	host sex
Definition	physical sex of the host
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/host_sex,
Concept Name:	mixs:host subject id
Normative URI	http://gensc.org/ns/mixs/host_subject_id
Label	host subject id
Definition	a unique identifier by which each subject can be referred to, de-identified, e.g. #131
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:host tot mass
Normative URI	http://gensc.org/ns/mixs/host_tot_mass
Label	host total mass
Definition	total mass of the host at collection, the unit depends on host
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:ihmc ethnicity
Normative URI	http://gensc.org/ns/mixs/ihmc_ethnicity
Label	IHMC ethnicity
Definition	ethnicity of the subject
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:ihmc medication code
Normative URI	http://gensc.org/ns/mixs/ihmc_medication_code
Label	IHMC medication code
Definition	can include multiple medication codes
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:liver disord
Normative URI	http://gensc.org/ns/mixs/liver_disord
Label	liver disorder
Definition	history of liver disorders; can include multiple disorders
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/liver_disord,
Concept Name:	mixs:medic hist perform
Normative URI	http://gensc.org/ns/mixs/medic_hist_perform
Label	medical history performed
Definition	whether full medical history was collected
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:misc param
Normative URI	http://gensc.org/ns/mixs/misc_param
Label	miscellaneous parameter
Definition	any other measurement performed or parameter collected, that is not listed here
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/misc_param,
Concept Name:	mixs:organism count
Normative URI	http://gensc.org/ns/mixs/organism_count
Label	organism count
Definition	total count of any organism per gram or volume of sample, should include name of organism followed by count; can include multiple organism counts
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:oxy stat samp
Normative URI	http://gensc.org/ns/mixs/oxy_stat_samp
Label	oxygenation status of sample
Definition	oxygenation status of sample
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:perturbation
Normative URI	http://gensc.org/ns/mixs/perturbation
Label	perturbation
Definition	type of perturbation, e.g. chemical administration, physical disturbance, etc., coupled with time that perturbation occurred; can include multiple perturbation types
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/perturbation,
Concept Name:	mixs:samp salinity
Normative URI	http://gensc.org/ns/mixs/samp_salinity
Label	sample salinity
Definition	salinity of sample, i.e. measure of total salt concentration
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:samp store dur
Normative URI	http://gensc.org/ns/mixs/samp_store_dur
Label	sample storage duration
Definition	duration for which sample was stored
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:samp store loc
Normative URI	http://gensc.org/ns/mixs/samp_store_loc
Label	sample storage location
Definition	location at which sample was stored, usually name of a specific freezer/room
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:samp store temp
Normative URI	http://gensc.org/ns/mixs/samp_store_temp
Label	sample storage temperature
Definition	temperature at which sample was stored, e.g. -80 degree Celsius
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:samp vol we dna ext
Normative URI	http://gensc.org/ns/mixs/samp_vol_we_dna_ext
Label	sample volume or weight for DNA extraction
Definition	volume (mL) or weight (g) of sample processed for DNA extraction
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:special diet
Normative URI	http://gensc.org/ns/mixs/special_diet
Label	special diet
Definition	specification of special diet; can include multiple special diets
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/special_diet,
Concept Name:	mixs:temp
Normative URI	http://gensc.org/ns/mixs/temp
Label	temperature
Definition	temperature of the sample at time of sampling
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/temp,

mixs:human-oral

Index to mixs:human-oral

By label: IHMC ethnicity • IHMC medication code • chemical administration • host age • host body product • host body site • host body temperature • host body-mass index • host diet • host disease status • host family relationship • host genotype • host height • host last meal • host occupation • host phenotype • host pulse • host sex • host subject id • host total mass • medical history performed • miscellaneous parameter • nose/mouth/teeth/throat disorder • organism count • oxygenation status of sample • perturbation • sample salinity • sample storage duration • sample storage location • sample storage temperature • sample volume or weight for DNA extraction • temperature • time since last toothbrushing

By concept name: mixs:chem administration • mixs:host age • mixs:host body mass index • mixs:host body product • mixs:host body site • mixs:host body temp • mixs:host diet • mixs:host disease stat • mixs:host family relationship • mixs:host genotype • mixs:host height • mixs:host last meal • mixs:host occupation • mixs:host phenotype • mixs:host pulse • mixs:host sex • mixs:host subject id • mixs:host tot mass • mixs:ihmc ethnicity • mixs:ihmc medication code • mixs:medic hist perform • mixs:misc param • mixs:nose mouth teeth throat disord • mixs:organism count • mixs:oxy stat samp • mixs:perturbation • mixs:samp salinity • mixs:samp store dur • mixs:samp store loc • mixs:samp store temp • mixs:samp vol we dna ext • mixs:temp • mixs:time last toothbrush

Concept definitions in mixs:human-oral

Concept Name:	mixs:chem administration
Normative URI	http://gensc.org/ns/mixs/chem_administration
Label	chemical administration
Definition	list of chemical compounds administered to the host or site where sampling occurred, and when (e.g. antibiotics, N fertilizer, air filter); can include multiple compounds. For Chemical Entities of Biological Interest ontology (CHEBI) (v 111), http://purl.bioontology.org/ontology/CHEBI
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:host age
Normative URI	http://gensc.org/ns/mixs/host_age
Label	host age
Definition	age of host at the time of sampling; relevant scale depends on species and study, e.g. could be seconds for amoebae or centuries for trees
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/host_age,
Concept Name:	mixs:host body mass index
Normative URI	http://gensc.org/ns/mixs/host_body_mass_index
Label	host body-mass index
Definition	body mass index, calculated as weight/(height)squared
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:host body product
Normative URI	http://gensc.org/ns/mixs/host_body_product
Label	host body product
Definition	substance produced by the body, e.g. stool, mucus, where the sample was obtained from. For Foundational Model of Anatomy Ontology (FMA) (v 3.1) terms, please see http://purl.bioontology.org/ontology/FMA
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:host body site
Normative URI	http://gensc.org/ns/mixs/host_body_site
Label	host body site
Definition	name of body site where the sample was obtained from, such as a specific organ or tissue (tongue, lung etc...). For Foundational Model of Anatomy Ontology (FMA) (v 3.1) terms, please see http://purl.bioontology.org/ontology/FMA
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:host body temp
Normative URI	http://gensc.org/ns/mixs/host_body_temp
Label	host body temperature
Definition	core body temperature of the host when sample was collected
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:host diet
Normative URI	http://gensc.org/ns/mixs/host_diet
Label	host diet
Definition	type of diet depending on the host, for animals omnivore, herbivore etc., for humans high-fat, meditteranean etc.; can include multiple diet types
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/host_diet,
Concept Name:	mixs:host disease stat
Normative URI	http://gensc.org/ns/mixs/host_disease_stat
Label	host disease status
Definition	list of diseases with which the host has been diagnosed; can include multiple diagnoses. the value of the field depends on host; for humans the terms should be chosen from DO (Disease Ontology) at http://www.disease-ontology.org, other hosts are free text
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:host family relationship
Normative URI	http://gensc.org/ns/mixs/host_family_relationship
Label	host family relationship
Definition	relationships to other hosts in the same study; can include multiple relationships
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:host genotype
Normative URI	http://gensc.org/ns/mixs/host_genotype
Label	host genotype
Definition	observed genotype
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:host height
Normative URI	http://gensc.org/ns/mixs/host_height
Label	host height
Definition	the height of subject
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/host_height,
Concept Name:	mixs:host last meal
Normative URI	http://gensc.org/ns/mixs/host_last_meal
Label	host last meal
Definition	content of last meal and time since feeding; can include multiple values
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:host occupation
Normative URI	http://gensc.org/ns/mixs/host_occupation
Label	host occupation
Definition	most frequent job performed by subject
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:host phenotype
Normative URI	http://gensc.org/ns/mixs/host_phenotype
Label	host phenotype
Definition	phenotype of host. For Phenotypic quality Ontology (PATO) (v 2013-10-28) terms, please see http://purl.bioontology.org/ontology/PATO
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:host pulse
Normative URI	http://gensc.org/ns/mixs/host_pulse
Label	host pulse
Definition	resting pulse, measured as beats per minute
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/host_pulse,
Concept Name:	mixs:host sex
Normative URI	http://gensc.org/ns/mixs/host_sex
Label	host sex
Definition	physical sex of the host
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/host_sex,
Concept Name:	mixs:host subject id
Normative URI	http://gensc.org/ns/mixs/host_subject_id
Label	host subject id
Definition	a unique identifier by which each subject can be referred to, de-identified, e.g. #131
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:host tot mass
Normative URI	http://gensc.org/ns/mixs/host_tot_mass
Label	host total mass
Definition	total mass of the host at collection, the unit depends on host
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:ihmc ethnicity
Normative URI	http://gensc.org/ns/mixs/ihmc_ethnicity
Label	IHMC ethnicity
Definition	ethnicity of the subject
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:ihmc medication code
Normative URI	http://gensc.org/ns/mixs/ihmc_medication_code
Label	IHMC medication code
Definition	can include multiple medication codes
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:medic hist perform
Normative URI	http://gensc.org/ns/mixs/medic_hist_perform
Label	medical history performed
Definition	whether full medical history was collected
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:misc param
Normative URI	http://gensc.org/ns/mixs/misc_param
Label	miscellaneous parameter
Definition	any other measurement performed or parameter collected, that is not listed here
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/misc_param,
Concept Name:	mixs:nose mouth teeth throat disord
Normative URI	http://gensc.org/ns/mixs/nose_mouth_teeth_throat_disord
Label	nose/mouth/teeth/throat disorder
Definition	history of nose/mouth/teeth/throat disorders; can include multiple disorders
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:organism count
Normative URI	http://gensc.org/ns/mixs/organism_count
Label	organism count
Definition	total count of any organism per gram or volume of sample, should include name of organism followed by count; can include multiple organism counts
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:oxy stat samp
Normative URI	http://gensc.org/ns/mixs/oxy_stat_samp
Label	oxygenation status of sample
Definition	oxygenation status of sample
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:perturbation
Normative URI	http://gensc.org/ns/mixs/perturbation
Label	perturbation
Definition	type of perturbation, e.g. chemical administration, physical disturbance, etc., coupled with time that perturbation occurred; can include multiple perturbation types
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/perturbation,
Concept Name:	mixs:samp salinity
Normative URI	http://gensc.org/ns/mixs/samp_salinity
Label	sample salinity
Definition	salinity of sample, i.e. measure of total salt concentration
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:samp store dur
Normative URI	http://gensc.org/ns/mixs/samp_store_dur
Label	sample storage duration
Definition	duration for which sample was stored
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:samp store loc
Normative URI	http://gensc.org/ns/mixs/samp_store_loc
Label	sample storage location
Definition	location at which sample was stored, usually name of a specific freezer/room
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:samp store temp
Normative URI	http://gensc.org/ns/mixs/samp_store_temp
Label	sample storage temperature
Definition	temperature at which sample was stored, e.g. -80 degree Celsius
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:samp vol we dna ext
Normative URI	http://gensc.org/ns/mixs/samp_vol_we_dna_ext
Label	sample volume or weight for DNA extraction
Definition	volume (mL) or weight (g) of sample processed for DNA extraction
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:temp
Normative URI	http://gensc.org/ns/mixs/temp
Label	temperature
Definition	temperature of the sample at time of sampling
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/temp,
Concept Name:	mixs:time last toothbrush
Normative URI	http://gensc.org/ns/mixs/time_last_toothbrush
Label	time since last toothbrushing
Definition	specification of the time since last toothbrushing
Defined By
	Required: No — Repeatable: No

mixs:human-skin

Index to mixs:human-skin

By label: IHMC ethnicity • IHMC medication code • chemical administration • dermatology disorder • dominant hand • host age • host body product • host body site • host body temperature • host body-mass index • host diet • host disease status • host family relationship • host genotype • host height • host last meal • host occupation • host phenotype • host pulse • host sex • host subject id • host total mass • medical history performed • miscellaneous parameter • organism count • oxygenation status of sample • perturbation • sample salinity • sample storage duration • sample storage location • sample storage temperature • sample volume or weight for DNA extraction • temperature • time since last wash

By concept name: mixs:chem administration • mixs:dermatology disord • mixs:dominant hand • mixs:host age • mixs:host body mass index • mixs:host body product • mixs:host body site • mixs:host body temp • mixs:host diet • mixs:host disease stat • mixs:host family relationship • mixs:host genotype • mixs:host height • mixs:host last meal • mixs:host occupation • mixs:host phenotype • mixs:host pulse • mixs:host sex • mixs:host subject id • mixs:host tot mass • mixs:ihmc ethnicity • mixs:ihmc medication code • mixs:medic hist perform • mixs:misc param • mixs:organism count • mixs:oxy stat samp • mixs:perturbation • mixs:samp salinity • mixs:samp store dur • mixs:samp store loc • mixs:samp store temp • mixs:samp vol we dna ext • mixs:temp • mixs:time since last wash

Concept definitions in mixs:human-skin

Concept Name:	mixs:chem administration
Normative URI	http://gensc.org/ns/mixs/chem_administration
Label	chemical administration
Definition	list of chemical compounds administered to the host or site where sampling occurred, and when (e.g. antibiotics, N fertilizer, air filter); can include multiple compounds. For Chemical Entities of Biological Interest ontology (CHEBI) (v 111), http://purl.bioontology.org/ontology/CHEBI
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:dermatology disord
Normative URI	http://gensc.org/ns/mixs/dermatology_disord
Label	dermatology disorder
Definition	history of dermatology disorders; can include multiple disorders
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:dominant hand
Normative URI	http://gensc.org/ns/mixs/dominant_hand
Label	dominant hand
Definition	dominant hand of the subject
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:host age
Normative URI	http://gensc.org/ns/mixs/host_age
Label	host age
Definition	age of host at the time of sampling; relevant scale depends on species and study, e.g. could be seconds for amoebae or centuries for trees
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/host_age,
Concept Name:	mixs:host body mass index
Normative URI	http://gensc.org/ns/mixs/host_body_mass_index
Label	host body-mass index
Definition	body mass index, calculated as weight/(height)squared
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:host body product
Normative URI	http://gensc.org/ns/mixs/host_body_product
Label	host body product
Definition	substance produced by the body, e.g. stool, mucus, where the sample was obtained from. For Foundational Model of Anatomy Ontology (FMA) (v 3.1) terms, please see http://purl.bioontology.org/ontology/FMA
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:host body site
Normative URI	http://gensc.org/ns/mixs/host_body_site
Label	host body site
Definition	name of body site where the sample was obtained from, such as a specific organ or tissue (tongue, lung etc...). For Foundational Model of Anatomy Ontology (FMA) (v 3.1) terms, please see http://purl.bioontology.org/ontology/FMA
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:host body temp
Normative URI	http://gensc.org/ns/mixs/host_body_temp
Label	host body temperature
Definition	core body temperature of the host when sample was collected
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:host diet
Normative URI	http://gensc.org/ns/mixs/host_diet
Label	host diet
Definition	type of diet depending on the host, for animals omnivore, herbivore etc., for humans high-fat, meditteranean etc.; can include multiple diet types
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/host_diet,
Concept Name:	mixs:host disease stat
Normative URI	http://gensc.org/ns/mixs/host_disease_stat
Label	host disease status
Definition	list of diseases with which the host has been diagnosed; can include multiple diagnoses. the value of the field depends on host; for humans the terms should be chosen from DO (Disease Ontology) at http://www.disease-ontology.org, other hosts are free text
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:host family relationship
Normative URI	http://gensc.org/ns/mixs/host_family_relationship
Label	host family relationship
Definition	relationships to other hosts in the same study; can include multiple relationships
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:host genotype
Normative URI	http://gensc.org/ns/mixs/host_genotype
Label	host genotype
Definition	observed genotype
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:host height
Normative URI	http://gensc.org/ns/mixs/host_height
Label	host height
Definition	the height of subject
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/host_height,
Concept Name:	mixs:host last meal
Normative URI	http://gensc.org/ns/mixs/host_last_meal
Label	host last meal
Definition	content of last meal and time since feeding; can include multiple values
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:host occupation
Normative URI	http://gensc.org/ns/mixs/host_occupation
Label	host occupation
Definition	most frequent job performed by subject
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:host phenotype
Normative URI	http://gensc.org/ns/mixs/host_phenotype
Label	host phenotype
Definition	phenotype of host. For Phenotypic quality Ontology (PATO) (v 2013-10-28) terms, please see http://purl.bioontology.org/ontology/PATO
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:host pulse
Normative URI	http://gensc.org/ns/mixs/host_pulse
Label	host pulse
Definition	resting pulse, measured as beats per minute
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/host_pulse,
Concept Name:	mixs:host sex
Normative URI	http://gensc.org/ns/mixs/host_sex
Label	host sex
Definition	physical sex of the host
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/host_sex,
Concept Name:	mixs:host subject id
Normative URI	http://gensc.org/ns/mixs/host_subject_id
Label	host subject id
Definition	a unique identifier by which each subject can be referred to, de-identified, e.g. #131
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:host tot mass
Normative URI	http://gensc.org/ns/mixs/host_tot_mass
Label	host total mass
Definition	total mass of the host at collection, the unit depends on host
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:ihmc ethnicity
Normative URI	http://gensc.org/ns/mixs/ihmc_ethnicity
Label	IHMC ethnicity
Definition	ethnicity of the subject
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:ihmc medication code
Normative URI	http://gensc.org/ns/mixs/ihmc_medication_code
Label	IHMC medication code
Definition	can include multiple medication codes
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:medic hist perform
Normative URI	http://gensc.org/ns/mixs/medic_hist_perform
Label	medical history performed
Definition	whether full medical history was collected
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:misc param
Normative URI	http://gensc.org/ns/mixs/misc_param
Label	miscellaneous parameter
Definition	any other measurement performed or parameter collected, that is not listed here
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/misc_param,
Concept Name:	mixs:organism count
Normative URI	http://gensc.org/ns/mixs/organism_count
Label	organism count
Definition	total count of any organism per gram or volume of sample, should include name of organism followed by count; can include multiple organism counts
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:oxy stat samp
Normative URI	http://gensc.org/ns/mixs/oxy_stat_samp
Label	oxygenation status of sample
Definition	oxygenation status of sample
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:perturbation
Normative URI	http://gensc.org/ns/mixs/perturbation
Label	perturbation
Definition	type of perturbation, e.g. chemical administration, physical disturbance, etc., coupled with time that perturbation occurred; can include multiple perturbation types
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/perturbation,
Concept Name:	mixs:samp salinity
Normative URI	http://gensc.org/ns/mixs/samp_salinity
Label	sample salinity
Definition	salinity of sample, i.e. measure of total salt concentration
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:samp store dur
Normative URI	http://gensc.org/ns/mixs/samp_store_dur
Label	sample storage duration
Definition	duration for which sample was stored
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:samp store loc
Normative URI	http://gensc.org/ns/mixs/samp_store_loc
Label	sample storage location
Definition	location at which sample was stored, usually name of a specific freezer/room
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:samp store temp
Normative URI	http://gensc.org/ns/mixs/samp_store_temp
Label	sample storage temperature
Definition	temperature at which sample was stored, e.g. -80 degree Celsius
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:samp vol we dna ext
Normative URI	http://gensc.org/ns/mixs/samp_vol_we_dna_ext
Label	sample volume or weight for DNA extraction
Definition	volume (mL) or weight (g) of sample processed for DNA extraction
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:temp
Normative URI	http://gensc.org/ns/mixs/temp
Label	temperature
Definition	temperature of the sample at time of sampling
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/temp,
Concept Name:	mixs:time since last wash
Normative URI	http://gensc.org/ns/mixs/time_since_last_wash
Label	time since last wash
Definition	specification of the time since last wash
Defined By
	Required: No — Repeatable: No

mixs:human-vaginal

Index to mixs:human-vaginal

By label: HRT • IHMC ethnicity • IHMC medication code • birth control • chemical administration • douche • gynecological disorder • host age • host body product • host body site • host body temperature • host body-mass index • host diet • host disease status • host family relationship • host genotype • host height • host last meal • host occupation • host phenotype • host pulse • host sex • host subject id • host total mass • hysterectomy • medical history performed • menarche • menopause • miscellaneous parameter • organism count • oxygenation status of sample • perturbation • pregnancy • sample salinity • sample storage duration • sample storage location • sample storage temperature • sample volume or weight for DNA extraction • sexual activity • temperature • urogenital disorder

By concept name: mixs:birth control • mixs:chem administration • mixs:douche • mixs:gynecologic disord • mixs:host age • mixs:host body mass index • mixs:host body product • mixs:host body site • mixs:host body temp • mixs:host diet • mixs:host disease stat • mixs:host family relationship • mixs:host genotype • mixs:host height • mixs:host last meal • mixs:host occupation • mixs:host phenotype • mixs:host pulse • mixs:host sex • mixs:host subject id • mixs:host tot mass • mixs:hrt • mixs:hysterectomy • mixs:ihmc ethnicity • mixs:ihmc medication code • mixs:medic hist perform • mixs:menarche • mixs:menopause • mixs:misc param • mixs:organism count • mixs:oxy stat samp • mixs:perturbation • mixs:pregnancy • mixs:samp salinity • mixs:samp store dur • mixs:samp store loc • mixs:samp store temp • mixs:samp vol we dna ext • mixs:sexual act • mixs:temp • mixs:urogenit disord

Concept definitions in mixs:human-vaginal

Concept Name:	mixs:birth control
Normative URI	http://gensc.org/ns/mixs/birth_control
Label	birth control
Definition	specification of birth control medication used
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:chem administration
Normative URI	http://gensc.org/ns/mixs/chem_administration
Label	chemical administration
Definition	list of chemical compounds administered to the host or site where sampling occurred, and when (e.g. antibiotics, N fertilizer, air filter); can include multiple compounds. For Chemical Entities of Biological Interest ontology (CHEBI) (v 111), http://purl.bioontology.org/ontology/CHEBI
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:douche
Normative URI	http://gensc.org/ns/mixs/douche
Label	douche
Definition	date of most recent douche
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/douche,
Concept Name:	mixs:gynecologic disord
Normative URI	http://gensc.org/ns/mixs/gynecologic_disord
Label	gynecological disorder
Definition	history of gynecological disorders; can include multiple disorders
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:host age
Normative URI	http://gensc.org/ns/mixs/host_age
Label	host age
Definition	age of host at the time of sampling; relevant scale depends on species and study, e.g. could be seconds for amoebae or centuries for trees
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/host_age,
Concept Name:	mixs:host body mass index
Normative URI	http://gensc.org/ns/mixs/host_body_mass_index
Label	host body-mass index
Definition	body mass index, calculated as weight/(height)squared
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:host body product
Normative URI	http://gensc.org/ns/mixs/host_body_product
Label	host body product
Definition	substance produced by the body, e.g. stool, mucus, where the sample was obtained from. For Foundational Model of Anatomy Ontology (FMA) (v 3.1) terms, please see http://purl.bioontology.org/ontology/FMA
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:host body site
Normative URI	http://gensc.org/ns/mixs/host_body_site
Label	host body site
Definition	name of body site where the sample was obtained from, such as a specific organ or tissue (tongue, lung etc...). For Foundational Model of Anatomy Ontology (FMA) (v 3.1) terms, please see http://purl.bioontology.org/ontology/FMA
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:host body temp
Normative URI	http://gensc.org/ns/mixs/host_body_temp
Label	host body temperature
Definition	core body temperature of the host when sample was collected
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:host diet
Normative URI	http://gensc.org/ns/mixs/host_diet
Label	host diet
Definition	type of diet depending on the host, for animals omnivore, herbivore etc., for humans high-fat, meditteranean etc.; can include multiple diet types
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/host_diet,
Concept Name:	mixs:host disease stat
Normative URI	http://gensc.org/ns/mixs/host_disease_stat
Label	host disease status
Definition	list of diseases with which the host has been diagnosed; can include multiple diagnoses. the value of the field depends on host; for humans the terms should be chosen from DO (Disease Ontology) at http://www.disease-ontology.org, other hosts are free text
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:host family relationship
Normative URI	http://gensc.org/ns/mixs/host_family_relationship
Label	host family relationship
Definition	relationships to other hosts in the same study; can include multiple relationships
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:host genotype
Normative URI	http://gensc.org/ns/mixs/host_genotype
Label	host genotype
Definition	observed genotype
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:host height
Normative URI	http://gensc.org/ns/mixs/host_height
Label	host height
Definition	the height of subject
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/host_height,
Concept Name:	mixs:host last meal
Normative URI	http://gensc.org/ns/mixs/host_last_meal
Label	host last meal
Definition	content of last meal and time since feeding; can include multiple values
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:host occupation
Normative URI	http://gensc.org/ns/mixs/host_occupation
Label	host occupation
Definition	most frequent job performed by subject
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:host phenotype
Normative URI	http://gensc.org/ns/mixs/host_phenotype
Label	host phenotype
Definition	phenotype of host. For Phenotypic quality Ontology (PATO) (v 2013-10-28) terms, please see http://purl.bioontology.org/ontology/PATO
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:host pulse
Normative URI	http://gensc.org/ns/mixs/host_pulse
Label	host pulse
Definition	resting pulse, measured as beats per minute
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/host_pulse,
Concept Name:	mixs:host sex
Normative URI	http://gensc.org/ns/mixs/host_sex
Label	host sex
Definition	physical sex of the host
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/host_sex,
Concept Name:	mixs:host subject id
Normative URI	http://gensc.org/ns/mixs/host_subject_id
Label	host subject id
Definition	a unique identifier by which each subject can be referred to, de-identified, e.g. #131
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:host tot mass
Normative URI	http://gensc.org/ns/mixs/host_tot_mass
Label	host total mass
Definition	total mass of the host at collection, the unit depends on host
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:hrt
Normative URI	http://gensc.org/ns/mixs/hrt
Label	HRT
Definition	whether subject had hormone replacement theraphy, and if yes start date
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/hrt,
Concept Name:	mixs:hysterectomy
Normative URI	http://gensc.org/ns/mixs/hysterectomy
Label	hysterectomy
Definition	specification of whether hysterectomy was performed
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/hysterectomy,
Concept Name:	mixs:ihmc ethnicity
Normative URI	http://gensc.org/ns/mixs/ihmc_ethnicity
Label	IHMC ethnicity
Definition	ethnicity of the subject
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:ihmc medication code
Normative URI	http://gensc.org/ns/mixs/ihmc_medication_code
Label	IHMC medication code
Definition	can include multiple medication codes
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:medic hist perform
Normative URI	http://gensc.org/ns/mixs/medic_hist_perform
Label	medical history performed
Definition	whether full medical history was collected
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:menarche
Normative URI	http://gensc.org/ns/mixs/menarche
Label	menarche
Definition	date of most recent menstruation
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/menarche,
Concept Name:	mixs:menopause
Normative URI	http://gensc.org/ns/mixs/menopause
Label	menopause
Definition	date of onset of menopause
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/menopause,
Concept Name:	mixs:misc param
Normative URI	http://gensc.org/ns/mixs/misc_param
Label	miscellaneous parameter
Definition	any other measurement performed or parameter collected, that is not listed here
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/misc_param,
Concept Name:	mixs:organism count
Normative URI	http://gensc.org/ns/mixs/organism_count
Label	organism count
Definition	total count of any organism per gram or volume of sample, should include name of organism followed by count; can include multiple organism counts
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:oxy stat samp
Normative URI	http://gensc.org/ns/mixs/oxy_stat_samp
Label	oxygenation status of sample
Definition	oxygenation status of sample
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:perturbation
Normative URI	http://gensc.org/ns/mixs/perturbation
Label	perturbation
Definition	type of perturbation, e.g. chemical administration, physical disturbance, etc., coupled with time that perturbation occurred; can include multiple perturbation types
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/perturbation,
Concept Name:	mixs:pregnancy
Normative URI	http://gensc.org/ns/mixs/pregnancy
Label	pregnancy
Definition	date due of pregnancy
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/pregnancy,
Concept Name:	mixs:samp salinity
Normative URI	http://gensc.org/ns/mixs/samp_salinity
Label	sample salinity
Definition	salinity of sample, i.e. measure of total salt concentration
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:samp store dur
Normative URI	http://gensc.org/ns/mixs/samp_store_dur
Label	sample storage duration
Definition	duration for which sample was stored
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:samp store loc
Normative URI	http://gensc.org/ns/mixs/samp_store_loc
Label	sample storage location
Definition	location at which sample was stored, usually name of a specific freezer/room
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:samp store temp
Normative URI	http://gensc.org/ns/mixs/samp_store_temp
Label	sample storage temperature
Definition	temperature at which sample was stored, e.g. -80 degree Celsius
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:samp vol we dna ext
Normative URI	http://gensc.org/ns/mixs/samp_vol_we_dna_ext
Label	sample volume or weight for DNA extraction
Definition	volume (mL) or weight (g) of sample processed for DNA extraction
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:sexual act
Normative URI	http://gensc.org/ns/mixs/sexual_act
Label	sexual activity
Definition	current sexual partner and frequency of sex
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/sexual_act,
Concept Name:	mixs:temp
Normative URI	http://gensc.org/ns/mixs/temp
Label	temperature
Definition	temperature of the sample at time of sampling
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/temp,
Concept Name:	mixs:urogenit disord
Normative URI	http://gensc.org/ns/mixs/urogenit_disord
Label	urogenital disorder
Definition	history of urogenital disorders, can include multiple disorders
Defined By
	Required: No — Repeatable: No

mixs:microbial mat/biofilm

Index to mixs:microbial mat/biofilm

By label: alkalinity • alkyl diethers • altitude • aminopeptidase activity • ammonium • bacterial carbon production • biomass • bishomohopanol • bromide • calcium • carbon/nitrogen ratio • chemical administration • chloride • chlorophyll • diether lipids • dissolved carbon dioxide • dissolved hydrogen • dissolved inorganic carbon • dissolved organic carbon • dissolved organic nitrogen • dissolved oxygen • elevation • geographic location (depth) • glucosidase activity • magnesium • mean friction velocity • mean peak friction velocity • methane • miscellaneous parameter • n-alkanes • nitrate • nitrite • nitrogen • organic carbon • organic matter • organic nitrogen • organism count • oxygenation status of sample • pH • particulate organic carbon • perturbation • petroleum hydrocarbon • phaeopigments • phosphate • phospholipid fatty acid • potassium • pressure • redox potential • salinity • sample storage duration • sample storage location • sample storage temperature • sample volume or weight for DNA extraction • silicate • sodium • sulfate • sulfide • temperature • total carbon • total nitrogen • total organic carbon • turbidity • water content

By concept name: mixs:alkalinity • mixs:alkyl diethers • mixs:alt • mixs:aminopept act • mixs:ammonium • mixs:bacteria carb prod • mixs:biomass • mixs:bishomohopanol • mixs:bromide • mixs:calcium • mixs:carb nitro ratio • mixs:chem administration • mixs:chloride • mixs:chlorophyll • mixs:depth • mixs:diether lipids • mixs:diss carb dioxide • mixs:diss hydrogen • mixs:diss inorg carb • mixs:diss org carb • mixs:diss org nitro • mixs:diss oxygen • mixs:elev • mixs:glucosidase act • mixs:magnesium • mixs:mean frict vel • mixs:mean peak frict vel • mixs:methane • mixs:misc param • mixs:n alkanes • mixs:nitrate • mixs:nitrite • mixs:nitro • mixs:org carb • mixs:org matter • mixs:org nitro • mixs:organism count • mixs:oxy stat samp • mixs:part org carb • mixs:perturbation • mixs:petroleum hydrocarb • mixs:ph • mixs:phaeopigments • mixs:phosphate • mixs:phosplipid fatt acid • mixs:potassium • mixs:pressure • mixs:redox potential • mixs:salinity • mixs:samp store dur • mixs:samp store loc • mixs:samp store temp • mixs:samp vol we dna ext • mixs:silicate • mixs:sodium • mixs:sulfate • mixs:sulfide • mixs:temp • mixs:tot carb • mixs:tot nitro • mixs:tot org carb • mixs:turbidity • mixs:water content

Concept definitions in mixs:microbial mat/biofilm

Concept Name:	mixs:alkalinity
Normative URI	http://gensc.org/ns/mixs/alkalinity
Label	alkalinity
Definition	alkalinity, the ability of a solution to neutralize acids to the equivalence point of carbonate or bicarbonate
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/alkalinity,
Concept Name:	mixs:alkyl diethers
Normative URI	http://gensc.org/ns/mixs/alkyl_diethers
Label	alkyl diethers
Definition	concentration of alkyl diethers
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:alt
Normative URI	http://gensc.org/ns/mixs/alt
Label	altitude
Definition	the altitude of the sample is the vertical distance between Earth's surface above sea level and the sampled position in the air
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/alt,
Concept Name:	mixs:aminopept act
Normative URI	http://gensc.org/ns/mixs/aminopept_act
Label	aminopeptidase activity
Definition	measurement of aminopeptidase activity
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:ammonium
Normative URI	http://gensc.org/ns/mixs/ammonium
Label	ammonium
Definition	concentration of ammonium
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/ammonium,
Concept Name:	mixs:bacteria carb prod
Normative URI	http://gensc.org/ns/mixs/bacteria_carb_prod
Label	bacterial carbon production
Definition	measurement of bacterial carbon production
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:biomass
Normative URI	http://gensc.org/ns/mixs/biomass
Label	biomass
Definition	amount of biomass; should include the name for the part of biomass measured, e.g. microbial, total. can include multiple measurements
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/biomass,
Concept Name:	mixs:bishomohopanol
Normative URI	http://gensc.org/ns/mixs/bishomohopanol
Label	bishomohopanol
Definition	concentration of bishomohopanol
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:bromide
Normative URI	http://gensc.org/ns/mixs/bromide
Label	bromide
Definition	concentration of bromide
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/bromide,
Concept Name:	mixs:calcium
Normative URI	http://gensc.org/ns/mixs/calcium
Label	calcium
Definition	concentration of calcium
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/calcium,
Concept Name:	mixs:carb nitro ratio
Normative URI	http://gensc.org/ns/mixs/carb_nitro_ratio
Label	carbon/nitrogen ratio
Definition	ratio of amount or concentrations of carbon to nitrogen
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:chem administration
Normative URI	http://gensc.org/ns/mixs/chem_administration
Label	chemical administration
Definition	list of chemical compounds administered to the host or site where sampling occurred, and when (e.g. antibiotics, N fertilizer, air filter); can include multiple compounds. For Chemical Entities of Biological Interest ontology (CHEBI) (v 111), http://purl.bioontology.org/ontology/CHEBI
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:chloride
Normative URI	http://gensc.org/ns/mixs/chloride
Label	chloride
Definition	concentration of chloride
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/chloride,
Concept Name:	mixs:chlorophyll
Normative URI	http://gensc.org/ns/mixs/chlorophyll
Label	chlorophyll
Definition	concentration of chlorophyll
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/chlorophyll,
Concept Name:	mixs:depth
Normative URI	http://gensc.org/ns/mixs/depth
Label	geographic location (depth)
Definition	Depth is defined as the vertical distance below local surface, e.g. for sediment or soil samples depth is measured from sediment or soil surface, respectively. Depth can be reported as an interval for subsurface samples.
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/depth, 0..1
Examples	10.3 m
Concept Name:	mixs:diether lipids
Normative URI	http://gensc.org/ns/mixs/diether_lipids
Label	diether lipids
Definition	concentration of diether lipids; can include multiple types of diether lipids
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:diss carb dioxide
Normative URI	http://gensc.org/ns/mixs/diss_carb_dioxide
Label	dissolved carbon dioxide
Definition	concentration of dissolved carbon dioxide
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:diss hydrogen
Normative URI	http://gensc.org/ns/mixs/diss_hydrogen
Label	dissolved hydrogen
Definition	concentration of dissolved hydrogen
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:diss inorg carb
Normative URI	http://gensc.org/ns/mixs/diss_inorg_carb
Label	dissolved inorganic carbon
Definition	dissolved inorganic carbon concentration
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:diss org carb
Normative URI	http://gensc.org/ns/mixs/diss_org_carb
Label	dissolved organic carbon
Definition	concentration of dissolved organic carbon
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:diss org nitro
Normative URI	http://gensc.org/ns/mixs/diss_org_nitro
Label	dissolved organic nitrogen
Definition	dissolved organic nitrogen concentration measured as; total dissolved nitrogen - NH4 - NO3 - NO2
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:diss oxygen
Normative URI	http://gensc.org/ns/mixs/diss_oxygen
Label	dissolved oxygen
Definition	concentration of dissolved oxygen
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/diss_oxygen,
Concept Name:	mixs:elev
Normative URI	http://gensc.org/ns/mixs/elev
Label	elevation
Definition	the elevation of the sampling site as measured by the vertical distance from mean sea level
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/elev,
Concept Name:	mixs:glucosidase act
Normative URI	http://gensc.org/ns/mixs/glucosidase_act
Label	glucosidase activity
Definition	measurement of glucosidase activity
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:magnesium
Normative URI	http://gensc.org/ns/mixs/magnesium
Label	magnesium
Definition	concentration of magnesium
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/magnesium,
Concept Name:	mixs:mean frict vel
Normative URI	http://gensc.org/ns/mixs/mean_frict_vel
Label	mean friction velocity
Definition	measurement of mean friction velocity
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:mean peak frict vel
Normative URI	http://gensc.org/ns/mixs/mean_peak_frict_vel
Label	mean peak friction velocity
Definition	measurement of mean peak friction velocity
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:methane
Normative URI	http://gensc.org/ns/mixs/methane
Label	methane
Definition	methane (gas) amount or concentration at the time of sampling
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/methane,
Concept Name:	mixs:misc param
Normative URI	http://gensc.org/ns/mixs/misc_param
Label	miscellaneous parameter
Definition	any other measurement performed or parameter collected, that is not listed here
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/misc_param,
Concept Name:	mixs:n alkanes
Normative URI	http://gensc.org/ns/mixs/n_alkanes
Label	n-alkanes
Definition	concentration of n-alkanes; can include multiple n-alkanes
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/n_alkanes,
Concept Name:	mixs:nitrate
Normative URI	http://gensc.org/ns/mixs/nitrate
Label	nitrate
Definition	concentration of nitrate
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/nitrate,
Concept Name:	mixs:nitrite
Normative URI	http://gensc.org/ns/mixs/nitrite
Label	nitrite
Definition	concentration of nitrite
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/nitrite,
Concept Name:	mixs:nitro
Normative URI	http://gensc.org/ns/mixs/nitro
Label	nitrogen
Definition	concentration of nitrogen (total)
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/nitro,
Concept Name:	mixs:org carb
Normative URI	http://gensc.org/ns/mixs/org_carb
Label	organic carbon
Definition	concentration of organic carbon
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/org_carb,
Concept Name:	mixs:org matter
Normative URI	http://gensc.org/ns/mixs/org_matter
Label	organic matter
Definition	concentration of organic matter
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/org_matter,
Concept Name:	mixs:org nitro
Normative URI	http://gensc.org/ns/mixs/org_nitro
Label	organic nitrogen
Definition	concentration of organic nitrogen
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/org_nitro,
Concept Name:	mixs:organism count
Normative URI	http://gensc.org/ns/mixs/organism_count
Label	organism count
Definition	total count of any organism per gram or volume of sample, should include name of organism followed by count; can include multiple organism counts
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:oxy stat samp
Normative URI	http://gensc.org/ns/mixs/oxy_stat_samp
Label	oxygenation status of sample
Definition	oxygenation status of sample
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:part org carb
Normative URI	http://gensc.org/ns/mixs/part_org_carb
Label	particulate organic carbon
Definition	concentration of particulate organic carbon
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:perturbation
Normative URI	http://gensc.org/ns/mixs/perturbation
Label	perturbation
Definition	type of perturbation, e.g. chemical administration, physical disturbance, etc., coupled with time that perturbation occurred; can include multiple perturbation types
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/perturbation,
Concept Name:	mixs:petroleum hydrocarb
Normative URI	http://gensc.org/ns/mixs/petroleum_hydrocarb
Label	petroleum hydrocarbon
Definition	concentration of petroleum hydrocarbon
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:ph
Normative URI	http://gensc.org/ns/mixs/ph
Label	pH
Definition	pH measurement
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/ph,
Concept Name:	mixs:phaeopigments
Normative URI	http://gensc.org/ns/mixs/phaeopigments
Label	phaeopigments
Definition	concentration of phaeopigments; can include multiple phaeopigments
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:phosphate
Normative URI	http://gensc.org/ns/mixs/phosphate
Label	phosphate
Definition	concentration of phosphate
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/phosphate,
Concept Name:	mixs:phosplipid fatt acid
Normative URI	http://gensc.org/ns/mixs/phosplipid_fatt_acid
Label	phospholipid fatty acid
Definition	concentration of phospholipid fatty acids; can include multiple values
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:potassium
Normative URI	http://gensc.org/ns/mixs/potassium
Label	potassium
Definition	concentration of potassium
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/potassium,
Concept Name:	mixs:pressure
Normative URI	http://gensc.org/ns/mixs/pressure
Label	pressure
Definition	pressure to which the sample is subject, in atmospheres
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/pressure,
Concept Name:	mixs:redox potential
Normative URI	http://gensc.org/ns/mixs/redox_potential
Label	redox potential
Definition	redox potential, measured relative to a hydrogen cell, indicating oxidation or reduction potential
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:salinity
Normative URI	http://gensc.org/ns/mixs/salinity
Label	salinity
Definition	salinity measurement
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/salinity,
Concept Name:	mixs:samp store dur
Normative URI	http://gensc.org/ns/mixs/samp_store_dur
Label	sample storage duration
Definition	duration for which sample was stored
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:samp store loc
Normative URI	http://gensc.org/ns/mixs/samp_store_loc
Label	sample storage location
Definition	location at which sample was stored, usually name of a specific freezer/room
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:samp store temp
Normative URI	http://gensc.org/ns/mixs/samp_store_temp
Label	sample storage temperature
Definition	temperature at which sample was stored, e.g. -80 degree Celsius
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:samp vol we dna ext
Normative URI	http://gensc.org/ns/mixs/samp_vol_we_dna_ext
Label	sample volume or weight for DNA extraction
Definition	volume (mL) or weight (g) of sample processed for DNA extraction
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:silicate
Normative URI	http://gensc.org/ns/mixs/silicate
Label	silicate
Definition	concentration of silicate
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/silicate,
Concept Name:	mixs:sodium
Normative URI	http://gensc.org/ns/mixs/sodium
Label	sodium
Definition	sodium concentration
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/sodium,
Concept Name:	mixs:sulfate
Normative URI	http://gensc.org/ns/mixs/sulfate
Label	sulfate
Definition	concentration of sulfate
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/sulfate,
Concept Name:	mixs:sulfide
Normative URI	http://gensc.org/ns/mixs/sulfide
Label	sulfide
Definition	concentration of sulfide
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/sulfide,
Concept Name:	mixs:temp
Normative URI	http://gensc.org/ns/mixs/temp
Label	temperature
Definition	temperature of the sample at time of sampling
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/temp,
Concept Name:	mixs:tot carb
Normative URI	http://gensc.org/ns/mixs/tot_carb
Label	total carbon
Definition	total carbon content
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/tot_carb,
Concept Name:	mixs:tot nitro
Normative URI	http://gensc.org/ns/mixs/tot_nitro
Label	total nitrogen
Definition	total nitrogen content of the sample
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/tot_nitro,
Concept Name:	mixs:tot org carb
Normative URI	http://gensc.org/ns/mixs/tot_org_carb
Label	total organic carbon
Definition	Definition for soil: total organic carbon content of the soil, definition otherwise: total organic carbon content
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/tot_org_carb,
Concept Name:	mixs:turbidity
Normative URI	http://gensc.org/ns/mixs/turbidity
Label	turbidity
Definition	turbidity measurement
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/turbidity,
Concept Name:	mixs:water content
Normative URI	http://gensc.org/ns/mixs/water_content
Label	water content
Definition	water content measurement
Defined By
	Required: No — Repeatable: No

mixs:misc environment

No concept defined yet for this collection.

mixs:miscellaneous natural or artificial environment

Index to mixs:miscellaneous natural or artificial environment

By label: alkalinity • altitude • ammonium • biomass • bromide • calcium • chemical administration • chloride • chlorophyll • density • diether lipids • dissolved carbon dioxide • dissolved hydrogen • dissolved inorganic carbon • dissolved organic nitrogen • dissolved oxygen • elevation • geographic location (depth) • miscellaneous parameter • nitrate • nitrite • nitrogen • organic carbon • organic matter • organic nitrogen • organism count • oxygenation status of sample • pH • perturbation • phosphate • phospholipid fatty acid • potassium • pressure • salinity • sample storage duration • sample storage location • sample storage temperature • sample volume or weight for DNA extraction • silicate • sodium • sulfate • sulfide • temperature • water current

By concept name: mixs:alkalinity • mixs:alt • mixs:ammonium • mixs:biomass • mixs:bromide • mixs:calcium • mixs:chem administration • mixs:chloride • mixs:chlorophyll • mixs:density • mixs:depth • mixs:diether lipids • mixs:diss carb dioxide • mixs:diss hydrogen • mixs:diss inorg carb • mixs:diss org nitro • mixs:diss oxygen • mixs:elev • mixs:misc param • mixs:nitrate • mixs:nitrite • mixs:nitro • mixs:org carb • mixs:org matter • mixs:org nitro • mixs:organism count • mixs:oxy stat samp • mixs:perturbation • mixs:ph • mixs:phosphate • mixs:phosplipid fatt acid • mixs:potassium • mixs:pressure • mixs:salinity • mixs:samp store dur • mixs:samp store loc • mixs:samp store temp • mixs:samp vol we dna ext • mixs:silicate • mixs:sodium • mixs:sulfate • mixs:sulfide • mixs:temp • mixs:water current

Concept definitions in mixs:miscellaneous natural or artificial environment

Concept Name:	mixs:alkalinity
Normative URI	http://gensc.org/ns/mixs/alkalinity
Label	alkalinity
Definition	alkalinity, the ability of a solution to neutralize acids to the equivalence point of carbonate or bicarbonate
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/alkalinity,
Concept Name:	mixs:alt
Normative URI	http://gensc.org/ns/mixs/alt
Label	altitude
Definition	the altitude of the sample is the vertical distance between Earth's surface above sea level and the sampled position in the air
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/alt,
Concept Name:	mixs:ammonium
Normative URI	http://gensc.org/ns/mixs/ammonium
Label	ammonium
Definition	concentration of ammonium
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/ammonium,
Concept Name:	mixs:biomass
Normative URI	http://gensc.org/ns/mixs/biomass
Label	biomass
Definition	amount of biomass; should include the name for the part of biomass measured, e.g. microbial, total. can include multiple measurements
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/biomass,
Concept Name:	mixs:bromide
Normative URI	http://gensc.org/ns/mixs/bromide
Label	bromide
Definition	concentration of bromide
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/bromide,
Concept Name:	mixs:calcium
Normative URI	http://gensc.org/ns/mixs/calcium
Label	calcium
Definition	concentration of calcium
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/calcium,
Concept Name:	mixs:chem administration
Normative URI	http://gensc.org/ns/mixs/chem_administration
Label	chemical administration
Definition	list of chemical compounds administered to the host or site where sampling occurred, and when (e.g. antibiotics, N fertilizer, air filter); can include multiple compounds. For Chemical Entities of Biological Interest ontology (CHEBI) (v 111), http://purl.bioontology.org/ontology/CHEBI
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:chloride
Normative URI	http://gensc.org/ns/mixs/chloride
Label	chloride
Definition	concentration of chloride
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/chloride,
Concept Name:	mixs:chlorophyll
Normative URI	http://gensc.org/ns/mixs/chlorophyll
Label	chlorophyll
Definition	concentration of chlorophyll
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/chlorophyll,
Concept Name:	mixs:density
Normative URI	http://gensc.org/ns/mixs/density
Label	density
Definition	density of sample
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/density,
Concept Name:	mixs:depth
Normative URI	http://gensc.org/ns/mixs/depth
Label	geographic location (depth)
Definition	Depth is defined as the vertical distance below local surface, e.g. for sediment or soil samples depth is measured from sediment or soil surface, respectively. Depth can be reported as an interval for subsurface samples.
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/depth, 0..1
Examples	10.3 m
Concept Name:	mixs:diether lipids
Normative URI	http://gensc.org/ns/mixs/diether_lipids
Label	diether lipids
Definition	concentration of diether lipids; can include multiple types of diether lipids
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:diss carb dioxide
Normative URI	http://gensc.org/ns/mixs/diss_carb_dioxide
Label	dissolved carbon dioxide
Definition	concentration of dissolved carbon dioxide
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:diss hydrogen
Normative URI	http://gensc.org/ns/mixs/diss_hydrogen
Label	dissolved hydrogen
Definition	concentration of dissolved hydrogen
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:diss inorg carb
Normative URI	http://gensc.org/ns/mixs/diss_inorg_carb
Label	dissolved inorganic carbon
Definition	dissolved inorganic carbon concentration
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:diss org nitro
Normative URI	http://gensc.org/ns/mixs/diss_org_nitro
Label	dissolved organic nitrogen
Definition	dissolved organic nitrogen concentration measured as; total dissolved nitrogen - NH4 - NO3 - NO2
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:diss oxygen
Normative URI	http://gensc.org/ns/mixs/diss_oxygen
Label	dissolved oxygen
Definition	concentration of dissolved oxygen
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/diss_oxygen,
Concept Name:	mixs:elev
Normative URI	http://gensc.org/ns/mixs/elev
Label	elevation
Definition	the elevation of the sampling site as measured by the vertical distance from mean sea level
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/elev,
Concept Name:	mixs:misc param
Normative URI	http://gensc.org/ns/mixs/misc_param
Label	miscellaneous parameter
Definition	any other measurement performed or parameter collected, that is not listed here
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/misc_param,
Concept Name:	mixs:nitrate
Normative URI	http://gensc.org/ns/mixs/nitrate
Label	nitrate
Definition	concentration of nitrate
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/nitrate,
Concept Name:	mixs:nitrite
Normative URI	http://gensc.org/ns/mixs/nitrite
Label	nitrite
Definition	concentration of nitrite
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/nitrite,
Concept Name:	mixs:nitro
Normative URI	http://gensc.org/ns/mixs/nitro
Label	nitrogen
Definition	concentration of nitrogen (total)
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/nitro,
Concept Name:	mixs:org carb
Normative URI	http://gensc.org/ns/mixs/org_carb
Label	organic carbon
Definition	concentration of organic carbon
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/org_carb,
Concept Name:	mixs:org matter
Normative URI	http://gensc.org/ns/mixs/org_matter
Label	organic matter
Definition	concentration of organic matter
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/org_matter,
Concept Name:	mixs:org nitro
Normative URI	http://gensc.org/ns/mixs/org_nitro
Label	organic nitrogen
Definition	concentration of organic nitrogen
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/org_nitro,
Concept Name:	mixs:organism count
Normative URI	http://gensc.org/ns/mixs/organism_count
Label	organism count
Definition	total count of any organism per gram or volume of sample, should include name of organism followed by count; can include multiple organism counts
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:oxy stat samp
Normative URI	http://gensc.org/ns/mixs/oxy_stat_samp
Label	oxygenation status of sample
Definition	oxygenation status of sample
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:perturbation
Normative URI	http://gensc.org/ns/mixs/perturbation
Label	perturbation
Definition	type of perturbation, e.g. chemical administration, physical disturbance, etc., coupled with time that perturbation occurred; can include multiple perturbation types
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/perturbation,
Concept Name:	mixs:ph
Normative URI	http://gensc.org/ns/mixs/ph
Label	pH
Definition	pH measurement
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/ph,
Concept Name:	mixs:phosphate
Normative URI	http://gensc.org/ns/mixs/phosphate
Label	phosphate
Definition	concentration of phosphate
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/phosphate,
Concept Name:	mixs:phosplipid fatt acid
Normative URI	http://gensc.org/ns/mixs/phosplipid_fatt_acid
Label	phospholipid fatty acid
Definition	concentration of phospholipid fatty acids; can include multiple values
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:potassium
Normative URI	http://gensc.org/ns/mixs/potassium
Label	potassium
Definition	concentration of potassium
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/potassium,
Concept Name:	mixs:pressure
Normative URI	http://gensc.org/ns/mixs/pressure
Label	pressure
Definition	pressure to which the sample is subject, in atmospheres
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/pressure,
Concept Name:	mixs:salinity
Normative URI	http://gensc.org/ns/mixs/salinity
Label	salinity
Definition	salinity measurement
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/salinity,
Concept Name:	mixs:samp store dur
Normative URI	http://gensc.org/ns/mixs/samp_store_dur
Label	sample storage duration
Definition	duration for which sample was stored
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:samp store loc
Normative URI	http://gensc.org/ns/mixs/samp_store_loc
Label	sample storage location
Definition	location at which sample was stored, usually name of a specific freezer/room
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:samp store temp
Normative URI	http://gensc.org/ns/mixs/samp_store_temp
Label	sample storage temperature
Definition	temperature at which sample was stored, e.g. -80 degree Celsius
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:samp vol we dna ext
Normative URI	http://gensc.org/ns/mixs/samp_vol_we_dna_ext
Label	sample volume or weight for DNA extraction
Definition	volume (mL) or weight (g) of sample processed for DNA extraction
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:silicate
Normative URI	http://gensc.org/ns/mixs/silicate
Label	silicate
Definition	concentration of silicate
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/silicate,
Concept Name:	mixs:sodium
Normative URI	http://gensc.org/ns/mixs/sodium
Label	sodium
Definition	sodium concentration
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/sodium,
Concept Name:	mixs:sulfate
Normative URI	http://gensc.org/ns/mixs/sulfate
Label	sulfate
Definition	concentration of sulfate
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/sulfate,
Concept Name:	mixs:sulfide
Normative URI	http://gensc.org/ns/mixs/sulfide
Label	sulfide
Definition	concentration of sulfide
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/sulfide,
Concept Name:	mixs:temp
Normative URI	http://gensc.org/ns/mixs/temp
Label	temperature
Definition	temperature of the sample at time of sampling
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/temp,
Concept Name:	mixs:water current
Normative URI	http://gensc.org/ns/mixs/water_current
Label	water current
Definition	measurement of magnitude and direction of flow within a fluid
Defined By
	Required: No — Repeatable: No

mixs:plant-associated

Index to mixs:plant-associated

By label: air temperature regimen • altitude • antibiotic regimen • chemical administration • chemical mutagen • climate environment • elevation • fertilizer regimen • fungicide regimen • gaseous environment • geographic location (depth) • gravity • growth hormone regimen • growth media • herbicide regimen • host age • host common name • host disease status • host dry mass • host genotype • host height • host infra-specific name • host infra-specific rank • host length • host life stage • host phenotype • host taxid • host total mass • host wet mass • humidity regimen • mechanical damage • mineral nutrient regimen • miscellaneous parameter • non-mineral nutrient regimen • organism count • oxygenation status of sample • pH regimen • perturbation • pesticide regimen • plant body site • plant product • radiation regimen • rainfall regimen • salt regimen • sample salinity • sample storage duration • sample storage location • sample storage temperature • sample volume or weight for DNA extraction • seasonal environment • standing water regimen • temperature • tissue culture growth media • water temperature regimen • watering regimen

By concept name: mixs:air temp regm • mixs:alt • mixs:antibiotic regm • mixs:chem administration • mixs:chem mutagen • mixs:climate environment • mixs:depth • mixs:elev • mixs:fertilizer regm • mixs:fungicide regm • mixs:gaseous environment • mixs:gravity • mixs:growth hormone regm • mixs:growth med • mixs:herbicide regm • mixs:host age • mixs:host common name • mixs:host disease stat • mixs:host dry mass • mixs:host genotype • mixs:host height • mixs:host infra specific name • mixs:host infra specific rank • mixs:host length • mixs:host life stage • mixs:host phenotype • mixs:host taxid • mixs:host tot mass • mixs:host wet mass • mixs:humidity regm • mixs:mechanical damage • mixs:mineral nutr regm • mixs:misc param • mixs:non mineral nutr regm • mixs:organism count • mixs:oxy stat samp • mixs:perturbation • mixs:pesticide regm • mixs:ph regm • mixs:plant body site • mixs:plant product • mixs:radiation regm • mixs:rainfall regm • mixs:salt regm • mixs:samp salinity • mixs:samp store dur • mixs:samp store loc • mixs:samp store temp • mixs:samp vol we dna ext • mixs:season environment • mixs:standing water regm • mixs:temp • mixs:tiss cult growth med • mixs:water temp regm • mixs:watering regm

Concept definitions in mixs:plant-associated

Concept Name:	mixs:air temp regm
Normative URI	http://gensc.org/ns/mixs/air_temp_regm
Label	air temperature regimen
Definition	information about treatment involving an exposure to varying temperatures; should include the temperature, treatment duration, interval and total experimental duration; can include different temperature regimens
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:alt
Normative URI	http://gensc.org/ns/mixs/alt
Label	altitude
Definition	the altitude of the sample is the vertical distance between Earth's surface above sea level and the sampled position in the air
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/alt,
Concept Name:	mixs:antibiotic regm
Normative URI	http://gensc.org/ns/mixs/antibiotic_regm
Label	antibiotic regimen
Definition	information about treatment involving antibiotic administration; should include the name of antibiotic, amount administered, treatment duration, interval and total experimental duration; can include multiple antibiotic regimens
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:chem administration
Normative URI	http://gensc.org/ns/mixs/chem_administration
Label	chemical administration
Definition	list of chemical compounds administered to the host or site where sampling occurred, and when (e.g. antibiotics, N fertilizer, air filter); can include multiple compounds. For Chemical Entities of Biological Interest ontology (CHEBI) (v 111), http://purl.bioontology.org/ontology/CHEBI
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:chem mutagen
Normative URI	http://gensc.org/ns/mixs/chem_mutagen
Label	chemical mutagen
Definition	treatment involving use of mutagens; should include the name of mutagen, amount administered, treatment duration, interval and total experimental duration; can include multiple mutagen regimens
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/chem_mutagen,
Concept Name:	mixs:climate environment
Normative URI	http://gensc.org/ns/mixs/climate_environment
Label	climate environment
Definition	treatment involving an exposure to a particular climate; can include multiple climates
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:depth
Normative URI	http://gensc.org/ns/mixs/depth
Label	geographic location (depth)
Definition	Depth is defined as the vertical distance below local surface, e.g. for sediment or soil samples depth is measured from sediment or soil surface, respectively. Depth can be reported as an interval for subsurface samples.
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/depth, 0..1
Examples	10.3 m
Concept Name:	mixs:elev
Normative URI	http://gensc.org/ns/mixs/elev
Label	elevation
Definition	the elevation of the sampling site as measured by the vertical distance from mean sea level
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/elev,
Concept Name:	mixs:fertilizer regm
Normative URI	http://gensc.org/ns/mixs/fertilizer_regm
Label	fertilizer regimen
Definition	information about treatment involving the use of fertilizers; should include the name fertilizer, amount administered, treatment duration, interval and total experimental duration; can include multiple fertilizer regimens
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:fungicide regm
Normative URI	http://gensc.org/ns/mixs/fungicide_regm
Label	fungicide regimen
Definition	information about treatment involving use of fungicides; should include the name of fungicide, amount administered, treatment duration, interval and total experimental duration; can include multiple fungicide regimens
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:gaseous environment
Normative URI	http://gensc.org/ns/mixs/gaseous_environment
Label	gaseous environment
Definition	use of conditions with differing gaseous environments; should include the name of gaseous compound, amount administered, treatment duration, interval and total experimental duration; can include multiple gaseous environment regimens
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:gravity
Normative URI	http://gensc.org/ns/mixs/gravity
Label	gravity
Definition	information about treatment involving use of gravity factor to study various types of responses in presence, absence or modified levels of gravity; can include multiple treatments
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/gravity,
Concept Name:	mixs:growth hormone regm
Normative URI	http://gensc.org/ns/mixs/growth_hormone_regm
Label	growth hormone regimen
Definition	information about treatment involving use of growth hormones; should include the name of growth hormone, amount administered, treatment duration, interval and total experimental duration; can include multiple growth hormone regimens
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:growth med
Normative URI	http://gensc.org/ns/mixs/growth_med
Label	growth media
Definition	information about growth media for growing the plants or tissue cultured samples
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/growth_med,
Concept Name:	mixs:herbicide regm
Normative URI	http://gensc.org/ns/mixs/herbicide_regm
Label	herbicide regimen
Definition	information about treatment involving use of herbicides; information about treatment involving use of growth hormones; should include the name of herbicide, amount administered, treatment duration, interval and total experimental duration; can include multiple regimens
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:host age
Normative URI	http://gensc.org/ns/mixs/host_age
Label	host age
Definition	age of host at the time of sampling; relevant scale depends on species and study, e.g. could be seconds for amoebae or centuries for trees
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/host_age,
Concept Name:	mixs:host common name
Normative URI	http://gensc.org/ns/mixs/host_common_name
Label	host common name
Definition	common name of the host, e.g. human
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:host disease stat
Normative URI	http://gensc.org/ns/mixs/host_disease_stat
Label	host disease status
Definition	list of diseases with which the host has been diagnosed; can include multiple diagnoses. the value of the field depends on host; for humans the terms should be chosen from DO (Disease Ontology) at http://www.disease-ontology.org, other hosts are free text
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:host dry mass
Normative URI	http://gensc.org/ns/mixs/host_dry_mass
Label	host dry mass
Definition	measurement of dry mass
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:host genotype
Normative URI	http://gensc.org/ns/mixs/host_genotype
Label	host genotype
Definition	observed genotype
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:host height
Normative URI	http://gensc.org/ns/mixs/host_height
Label	host height
Definition	the height of subject
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/host_height,
Concept Name:	mixs:host infra specific name
Normative URI	http://gensc.org/ns/mixs/host_infra_specific_name
Label	host infra-specific name
Definition	taxonomic information about the host below subspecies level
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:host infra specific rank
Normative URI	http://gensc.org/ns/mixs/host_infra_specific_rank
Label	host infra-specific rank
Definition	taxonomic rank information about the host below subspecies level, such as variety, form, rank etc.
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:host length
Normative URI	http://gensc.org/ns/mixs/host_length
Label	host length
Definition	the length of subject
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/host_length,
Concept Name:	mixs:host life stage
Normative URI	http://gensc.org/ns/mixs/host_life_stage
Label	host life stage
Definition	description of life stage of host
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:host phenotype
Normative URI	http://gensc.org/ns/mixs/host_phenotype
Label	host phenotype
Definition	phenotype of host. For Phenotypic quality Ontology (PATO) (v 2013-10-28) terms, please see http://purl.bioontology.org/ontology/PATO
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:host taxid
Normative URI	http://gensc.org/ns/mixs/host_taxid
Label	host taxid
Definition	NCBI taxon id of the host, e.g. 9606
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/host_taxid,
Concept Name:	mixs:host tot mass
Normative URI	http://gensc.org/ns/mixs/host_tot_mass
Label	host total mass
Definition	total mass of the host at collection, the unit depends on host
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:host wet mass
Normative URI	http://gensc.org/ns/mixs/host_wet_mass
Label	host wet mass
Definition	measurement of wet mass
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:humidity regm
Normative URI	http://gensc.org/ns/mixs/humidity_regm
Label	humidity regimen
Definition	information about treatment involving an exposure to varying degree of humidity; information about treatment involving use of growth hormones; should include amount of humidity administered, treatment duration, interval and total experimental duration; can include multiple regimens
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:mechanical damage
Normative URI	http://gensc.org/ns/mixs/mechanical_damage
Label	mechanical damage
Definition	information about any mechanical damage exerted on the plant; can include multiple damages and sites
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:mineral nutr regm
Normative URI	http://gensc.org/ns/mixs/mineral_nutr_regm
Label	mineral nutrient regimen
Definition	information about treatment involving the use of mineral supplements; should include the name of mineral nutrient, amount administered, treatment duration, interval and total experimental duration; can include multiple mineral nutrient regimens
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:misc param
Normative URI	http://gensc.org/ns/mixs/misc_param
Label	miscellaneous parameter
Definition	any other measurement performed or parameter collected, that is not listed here
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/misc_param,
Concept Name:	mixs:non mineral nutr regm
Normative URI	http://gensc.org/ns/mixs/non_mineral_nutr_regm
Label	non-mineral nutrient regimen
Definition	information about treatment involving the exposure of plant to non-mineral nutrient such as oxygen, hydrogen or carbon; should include the name of non-mineral nutrient, amount administered, treatment duration, interval and total experimental duration; can include multiple non-mineral nutrient regimens
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:organism count
Normative URI	http://gensc.org/ns/mixs/organism_count
Label	organism count
Definition	total count of any organism per gram or volume of sample, should include name of organism followed by count; can include multiple organism counts
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:oxy stat samp
Normative URI	http://gensc.org/ns/mixs/oxy_stat_samp
Label	oxygenation status of sample
Definition	oxygenation status of sample
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:perturbation
Normative URI	http://gensc.org/ns/mixs/perturbation
Label	perturbation
Definition	type of perturbation, e.g. chemical administration, physical disturbance, etc., coupled with time that perturbation occurred; can include multiple perturbation types
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/perturbation,
Concept Name:	mixs:pesticide regm
Normative URI	http://gensc.org/ns/mixs/pesticide_regm
Label	pesticide regimen
Definition	information about treatment involving use of insecticides; should include the name of pesticide, amount administered, treatment duration, interval and total experimental duration; can include multiple pesticide regimens
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:ph regm
Normative URI	http://gensc.org/ns/mixs/ph_regm
Label	pH regimen
Definition	information about treatment involving exposure of plants to varying levels of pH of the growth media; can include multiple regimen
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/ph_regm,
Concept Name:	mixs:plant body site
Normative URI	http://gensc.org/ns/mixs/plant_body_site
Label	plant body site
Definition	name of body site that the sample was obtained from. For Plant Ontology (PO) (v 20) terms, see http://purl.bioontology.org/ontology/PO
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:plant product
Normative URI	http://gensc.org/ns/mixs/plant_product
Label	plant product
Definition	substance produced by the plant, where the sample was obtained from
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:radiation regm
Normative URI	http://gensc.org/ns/mixs/radiation_regm
Label	radiation regimen
Definition	information about treatment involving exposure of plant or a plant part to a particular radiation regimen; should include the radiation type, amount or intensity administered, treatment duration, interval and total experimental duration; can include multiple radiation regimens
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:rainfall regm
Normative URI	http://gensc.org/ns/mixs/rainfall_regm
Label	rainfall regimen
Definition	information about treatment involving an exposure to a given amount of rainfall; can include multiple regimens
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:salt regm
Normative URI	http://gensc.org/ns/mixs/salt_regm
Label	salt regimen
Definition	information about treatment involving use of salts as supplement to liquid and soil growth media; should include the name of salt, amount administered, treatment duration, interval and total experimental duration; can include multiple salt regimens
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/salt_regm,
Concept Name:	mixs:samp salinity
Normative URI	http://gensc.org/ns/mixs/samp_salinity
Label	sample salinity
Definition	salinity of sample, i.e. measure of total salt concentration
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:samp store dur
Normative URI	http://gensc.org/ns/mixs/samp_store_dur
Label	sample storage duration
Definition	duration for which sample was stored
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:samp store loc
Normative URI	http://gensc.org/ns/mixs/samp_store_loc
Label	sample storage location
Definition	location at which sample was stored, usually name of a specific freezer/room
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:samp store temp
Normative URI	http://gensc.org/ns/mixs/samp_store_temp
Label	sample storage temperature
Definition	temperature at which sample was stored, e.g. -80 degree Celsius
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:samp vol we dna ext
Normative URI	http://gensc.org/ns/mixs/samp_vol_we_dna_ext
Label	sample volume or weight for DNA extraction
Definition	volume (mL) or weight (g) of sample processed for DNA extraction
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:season environment
Normative URI	http://gensc.org/ns/mixs/season_environment
Label	seasonal environment
Definition	treatment involving an exposure to a particular season (e.g. winter, summer, rabi, rainy etc.)
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:standing water regm
Normative URI	http://gensc.org/ns/mixs/standing_water_regm
Label	standing water regimen
Definition	treatment involving an exposure to standing water during a plant's life span, types can be flood water or standing water; can include multiple regimens
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:temp
Normative URI	http://gensc.org/ns/mixs/temp
Label	temperature
Definition	temperature of the sample at time of sampling
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/temp,
Concept Name:	mixs:tiss cult growth med
Normative URI	http://gensc.org/ns/mixs/tiss_cult_growth_med
Label	tissue culture growth media
Definition	description of plant tissue culture growth media used
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:water temp regm
Normative URI	http://gensc.org/ns/mixs/water_temp_regm
Label	water temperature regimen
Definition	information about treatment involving an exposure to water with varying degree of temperature; can include multiple regimens
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:watering regm
Normative URI	http://gensc.org/ns/mixs/watering_regm
Label	watering regimen
Definition	information about treatment involving an exposure to watering frequencies; can include multiple regimens
Defined By
	Required: No — Repeatable: No

mixs:sediment

Index to mixs:sediment

By label: alkalinity • alkyl diethers • altitude • aminopeptidase activity • ammonium • bacterial carbon production • biomass • bishomohopanol • bromide • calcium • carbon/nitrogen ratio • chemical administration • chloride • chlorophyll • density • diether lipids • dissolved carbon dioxide • dissolved hydrogen • dissolved inorganic carbon • dissolved organic carbon • dissolved organic nitrogen • dissolved oxygen • elevation • geographic location (depth) • glucosidase activity • magnesium • mean friction velocity • mean peak friction velocity • methane • miscellaneous parameter • n-alkanes • nitrate • nitrite • nitrogen • organic carbon • organic matter • organic nitrogen • organism count • oxygenation status of sample • pH • particle classification • particulate organic carbon • perturbation • petroleum hydrocarbon • phaeopigments • phosphate • phospholipid fatty acid • porosity • potassium • pressure • redox potential • salinity • sample storage duration • sample storage location • sample storage temperature • sample volume or weight for DNA extraction • sediment type • silicate • sodium • sulfate • sulfide • temperature • tidal stage • total carbon • total nitrogen • total organic carbon • turbidity • water content

By concept name: mixs:alkalinity • mixs:alkyl diethers • mixs:alt • mixs:aminopept act • mixs:ammonium • mixs:bacteria carb prod • mixs:biomass • mixs:bishomohopanol • mixs:bromide • mixs:calcium • mixs:carb nitro ratio • mixs:chem administration • mixs:chloride • mixs:chlorophyll • mixs:density • mixs:depth • mixs:diether lipids • mixs:diss carb dioxide • mixs:diss hydrogen • mixs:diss inorg carb • mixs:diss org carb • mixs:diss org nitro • mixs:diss oxygen • mixs:elev • mixs:glucosidase act • mixs:magnesium • mixs:mean frict vel • mixs:mean peak frict vel • mixs:methane • mixs:misc param • mixs:n alkanes • mixs:nitrate • mixs:nitrite • mixs:nitro • mixs:org carb • mixs:org matter • mixs:org nitro • mixs:organism count • mixs:oxy stat samp • mixs:part org carb • mixs:particle class • mixs:perturbation • mixs:petroleum hydrocarb • mixs:ph • mixs:phaeopigments • mixs:phosphate • mixs:phosplipid fatt acid • mixs:porosity • mixs:potassium • mixs:pressure • mixs:redox potential • mixs:salinity • mixs:samp store dur • mixs:samp store loc • mixs:samp store temp • mixs:samp vol we dna ext • mixs:sediment type • mixs:silicate • mixs:sodium • mixs:sulfate • mixs:sulfide • mixs:temp • mixs:tidal stage • mixs:tot carb • mixs:tot nitro • mixs:tot org carb • mixs:turbidity • mixs:water content

Concept definitions in mixs:sediment

Concept Name:	mixs:alkalinity
Normative URI	http://gensc.org/ns/mixs/alkalinity
Label	alkalinity
Definition	alkalinity, the ability of a solution to neutralize acids to the equivalence point of carbonate or bicarbonate
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/alkalinity,
Concept Name:	mixs:alkyl diethers
Normative URI	http://gensc.org/ns/mixs/alkyl_diethers
Label	alkyl diethers
Definition	concentration of alkyl diethers
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:alt
Normative URI	http://gensc.org/ns/mixs/alt
Label	altitude
Definition	the altitude of the sample is the vertical distance between Earth's surface above sea level and the sampled position in the air
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/alt,
Concept Name:	mixs:aminopept act
Normative URI	http://gensc.org/ns/mixs/aminopept_act
Label	aminopeptidase activity
Definition	measurement of aminopeptidase activity
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:ammonium
Normative URI	http://gensc.org/ns/mixs/ammonium
Label	ammonium
Definition	concentration of ammonium
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/ammonium,
Concept Name:	mixs:bacteria carb prod
Normative URI	http://gensc.org/ns/mixs/bacteria_carb_prod
Label	bacterial carbon production
Definition	measurement of bacterial carbon production
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:biomass
Normative URI	http://gensc.org/ns/mixs/biomass
Label	biomass
Definition	amount of biomass; should include the name for the part of biomass measured, e.g. microbial, total. can include multiple measurements
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/biomass,
Concept Name:	mixs:bishomohopanol
Normative URI	http://gensc.org/ns/mixs/bishomohopanol
Label	bishomohopanol
Definition	concentration of bishomohopanol
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:bromide
Normative URI	http://gensc.org/ns/mixs/bromide
Label	bromide
Definition	concentration of bromide
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/bromide,
Concept Name:	mixs:calcium
Normative URI	http://gensc.org/ns/mixs/calcium
Label	calcium
Definition	concentration of calcium
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/calcium,
Concept Name:	mixs:carb nitro ratio
Normative URI	http://gensc.org/ns/mixs/carb_nitro_ratio
Label	carbon/nitrogen ratio
Definition	ratio of amount or concentrations of carbon to nitrogen
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:chem administration
Normative URI	http://gensc.org/ns/mixs/chem_administration
Label	chemical administration
Definition	list of chemical compounds administered to the host or site where sampling occurred, and when (e.g. antibiotics, N fertilizer, air filter); can include multiple compounds. For Chemical Entities of Biological Interest ontology (CHEBI) (v 111), http://purl.bioontology.org/ontology/CHEBI
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:chloride
Normative URI	http://gensc.org/ns/mixs/chloride
Label	chloride
Definition	concentration of chloride
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/chloride,
Concept Name:	mixs:chlorophyll
Normative URI	http://gensc.org/ns/mixs/chlorophyll
Label	chlorophyll
Definition	concentration of chlorophyll
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/chlorophyll,
Concept Name:	mixs:density
Normative URI	http://gensc.org/ns/mixs/density
Label	density
Definition	density of sample
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/density,
Concept Name:	mixs:depth
Normative URI	http://gensc.org/ns/mixs/depth
Label	geographic location (depth)
Definition	Depth is defined as the vertical distance below local surface, e.g. for sediment or soil samples depth is measured from sediment or soil surface, respectively. Depth can be reported as an interval for subsurface samples.
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/depth, 0..1
Examples	10.3 m
Concept Name:	mixs:diether lipids
Normative URI	http://gensc.org/ns/mixs/diether_lipids
Label	diether lipids
Definition	concentration of diether lipids; can include multiple types of diether lipids
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:diss carb dioxide
Normative URI	http://gensc.org/ns/mixs/diss_carb_dioxide
Label	dissolved carbon dioxide
Definition	concentration of dissolved carbon dioxide
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:diss hydrogen
Normative URI	http://gensc.org/ns/mixs/diss_hydrogen
Label	dissolved hydrogen
Definition	concentration of dissolved hydrogen
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:diss inorg carb
Normative URI	http://gensc.org/ns/mixs/diss_inorg_carb
Label	dissolved inorganic carbon
Definition	dissolved inorganic carbon concentration
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:diss org carb
Normative URI	http://gensc.org/ns/mixs/diss_org_carb
Label	dissolved organic carbon
Definition	concentration of dissolved organic carbon
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:diss org nitro
Normative URI	http://gensc.org/ns/mixs/diss_org_nitro
Label	dissolved organic nitrogen
Definition	dissolved organic nitrogen concentration measured as; total dissolved nitrogen - NH4 - NO3 - NO2
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:diss oxygen
Normative URI	http://gensc.org/ns/mixs/diss_oxygen
Label	dissolved oxygen
Definition	concentration of dissolved oxygen
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/diss_oxygen,
Concept Name:	mixs:elev
Normative URI	http://gensc.org/ns/mixs/elev
Label	elevation
Definition	the elevation of the sampling site as measured by the vertical distance from mean sea level
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/elev,
Concept Name:	mixs:glucosidase act
Normative URI	http://gensc.org/ns/mixs/glucosidase_act
Label	glucosidase activity
Definition	measurement of glucosidase activity
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:magnesium
Normative URI	http://gensc.org/ns/mixs/magnesium
Label	magnesium
Definition	concentration of magnesium
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/magnesium,
Concept Name:	mixs:mean frict vel
Normative URI	http://gensc.org/ns/mixs/mean_frict_vel
Label	mean friction velocity
Definition	measurement of mean friction velocity
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:mean peak frict vel
Normative URI	http://gensc.org/ns/mixs/mean_peak_frict_vel
Label	mean peak friction velocity
Definition	measurement of mean peak friction velocity
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:methane
Normative URI	http://gensc.org/ns/mixs/methane
Label	methane
Definition	methane (gas) amount or concentration at the time of sampling
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/methane,
Concept Name:	mixs:misc param
Normative URI	http://gensc.org/ns/mixs/misc_param
Label	miscellaneous parameter
Definition	any other measurement performed or parameter collected, that is not listed here
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/misc_param,
Concept Name:	mixs:n alkanes
Normative URI	http://gensc.org/ns/mixs/n_alkanes
Label	n-alkanes
Definition	concentration of n-alkanes; can include multiple n-alkanes
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/n_alkanes,
Concept Name:	mixs:nitrate
Normative URI	http://gensc.org/ns/mixs/nitrate
Label	nitrate
Definition	concentration of nitrate
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/nitrate,
Concept Name:	mixs:nitrite
Normative URI	http://gensc.org/ns/mixs/nitrite
Label	nitrite
Definition	concentration of nitrite
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/nitrite,
Concept Name:	mixs:nitro
Normative URI	http://gensc.org/ns/mixs/nitro
Label	nitrogen
Definition	concentration of nitrogen (total)
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/nitro,
Concept Name:	mixs:org carb
Normative URI	http://gensc.org/ns/mixs/org_carb
Label	organic carbon
Definition	concentration of organic carbon
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/org_carb,
Concept Name:	mixs:org matter
Normative URI	http://gensc.org/ns/mixs/org_matter
Label	organic matter
Definition	concentration of organic matter
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/org_matter,
Concept Name:	mixs:org nitro
Normative URI	http://gensc.org/ns/mixs/org_nitro
Label	organic nitrogen
Definition	concentration of organic nitrogen
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/org_nitro,
Concept Name:	mixs:organism count
Normative URI	http://gensc.org/ns/mixs/organism_count
Label	organism count
Definition	total count of any organism per gram or volume of sample, should include name of organism followed by count; can include multiple organism counts
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:oxy stat samp
Normative URI	http://gensc.org/ns/mixs/oxy_stat_samp
Label	oxygenation status of sample
Definition	oxygenation status of sample
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:part org carb
Normative URI	http://gensc.org/ns/mixs/part_org_carb
Label	particulate organic carbon
Definition	concentration of particulate organic carbon
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:particle class
Normative URI	http://gensc.org/ns/mixs/particle_class
Label	particle classification
Definition	particles are classified, based on their size, into six general categories:clay, silt, sand, gravel, cobbles, and boulders; should include amount of particle preceded by the name of the particle type; can include multiple values
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:perturbation
Normative URI	http://gensc.org/ns/mixs/perturbation
Label	perturbation
Definition	type of perturbation, e.g. chemical administration, physical disturbance, etc., coupled with time that perturbation occurred; can include multiple perturbation types
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/perturbation,
Concept Name:	mixs:petroleum hydrocarb
Normative URI	http://gensc.org/ns/mixs/petroleum_hydrocarb
Label	petroleum hydrocarbon
Definition	concentration of petroleum hydrocarbon
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:ph
Normative URI	http://gensc.org/ns/mixs/ph
Label	pH
Definition	pH measurement
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/ph,
Concept Name:	mixs:phaeopigments
Normative URI	http://gensc.org/ns/mixs/phaeopigments
Label	phaeopigments
Definition	concentration of phaeopigments; can include multiple phaeopigments
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:phosphate
Normative URI	http://gensc.org/ns/mixs/phosphate
Label	phosphate
Definition	concentration of phosphate
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/phosphate,
Concept Name:	mixs:phosplipid fatt acid
Normative URI	http://gensc.org/ns/mixs/phosplipid_fatt_acid
Label	phospholipid fatty acid
Definition	concentration of phospholipid fatty acids; can include multiple values
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:porosity
Normative URI	http://gensc.org/ns/mixs/porosity
Label	porosity
Definition	porosity of deposited sediment is volume of voids divided by the total volume of sample
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/porosity,
Concept Name:	mixs:potassium
Normative URI	http://gensc.org/ns/mixs/potassium
Label	potassium
Definition	concentration of potassium
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/potassium,
Concept Name:	mixs:pressure
Normative URI	http://gensc.org/ns/mixs/pressure
Label	pressure
Definition	pressure to which the sample is subject, in atmospheres
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/pressure,
Concept Name:	mixs:redox potential
Normative URI	http://gensc.org/ns/mixs/redox_potential
Label	redox potential
Definition	redox potential, measured relative to a hydrogen cell, indicating oxidation or reduction potential
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:salinity
Normative URI	http://gensc.org/ns/mixs/salinity
Label	salinity
Definition	salinity measurement
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/salinity,
Concept Name:	mixs:samp store dur
Normative URI	http://gensc.org/ns/mixs/samp_store_dur
Label	sample storage duration
Definition	duration for which sample was stored
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:samp store loc
Normative URI	http://gensc.org/ns/mixs/samp_store_loc
Label	sample storage location
Definition	location at which sample was stored, usually name of a specific freezer/room
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:samp store temp
Normative URI	http://gensc.org/ns/mixs/samp_store_temp
Label	sample storage temperature
Definition	temperature at which sample was stored, e.g. -80 degree Celsius
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:samp vol we dna ext
Normative URI	http://gensc.org/ns/mixs/samp_vol_we_dna_ext
Label	sample volume or weight for DNA extraction
Definition	volume (mL) or weight (g) of sample processed for DNA extraction
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:sediment type
Normative URI	http://gensc.org/ns/mixs/sediment_type
Label	sediment type
Definition	information about the sediment type based on major constituents
Defined By
	Required: No — Repeatable: No
Concept Name:	mixs:silicate
Normative URI	http://gensc.org/ns/mixs/silicate
Label	silicate
Definition	concentration of silicate
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/silicate,
Concept Name:	mixs:sodium
Normative URI	http://gensc.org/ns/mixs/sodium
Label	sodium
Definition	sodium concentration
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/sodium,
Concept Name:	mixs:sulfate
Normative URI	http://gensc.org/ns/mixs/sulfate
Label	sulfate
Definition	concentration of sulfate
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/sulfate,
Concept Name:	mixs:sulfide
Normative URI	http://gensc.org/ns/mixs/sulfide
Label	sulfide
Definition	concentration of sulfide
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/sulfide,
Concept Name:	mixs:temp
Normative URI	http://gensc.org/ns/mixs/temp
Label	temperature
Definition	temperature of the sample at time of sampling
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/temp,
Concept Name:	mixs:tidal stage
Normative URI	http://gensc.org/ns/mixs/tidal_stage
Label	tidal stage
Definition	stage of tide
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/tidal_stage,
Concept Name:	mixs:tot carb
Normative URI	http://gensc.org/ns/mixs/tot_carb
Label	total carbon
Definition	total carbon content
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/tot_carb,
Concept Name:	mixs:tot nitro
Normative URI	http://gensc.org/ns/mixs/tot_nitro
Label	total nitrogen
Definition	total nitrogen content of the sample
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/tot_nitro,
Concept Name:	mixs:tot org carb
Normative URI	http://gensc.org/ns/mixs/tot_org_carb
Label	total organic carbon
Definition	Definition for soil: total organic carbon content of the soil, definition otherwise: total organic carbon content
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/tot_org_carb,
Concept Name:	mixs:turbidity
Normative URI	http://gensc.org/ns/mixs/turbidity
Label	turbidity
Definition	turbidity measurement
Defined By
	Required: No — Repeatable: Nohttp://gensc.org/ns/mixs/turbidity,
Concept Name:	mixs:water content
Normative URI	http://gensc.org/ns/mixs/water_content
Label	water content
Definition	water content measurement
Defined By
	Required: No — Repeatable: No

@@ Line 5: / Line 5: @@
 == Dynamic Term List ==
+<!--
+-->{{#vardefine: collectionsDisplayLimit|17 <!-- 18 or 20 seems to high to display it all AP 2020-01-28-->}}<!--
+-->{{#vardefine: collectionsTotal|{{#ask: [[Category:Concept collection]] [[skos:inScheme::MIxS]] |format=count }}}}<!--
+-->{{#ifexpr: {{#var: collectionsTotal}} > {{#var: collectionsDisplayLimit}} <!--
+then-->|Note that only term definitions of {{#var: collectionsDisplayLimit}}&nbsp;collections out of {{#var: collectionsTotal}} can be displayed here in detail, the remaining collections can be accessed on [[#further collection results|further result pages (the link at the bottom of this page)]].<!--
+else-->|<!--
+-->}}<!--
+-->
 === Index to concepts (all collections combined)===
 {{Concept scheme/Concepts index list by label and name | scheme name=MIxS | link style=local page link}}
-<!--The following creates a subheading for each collections, provides an index within the collection, and then a table of concepts:-->
+<!--
-{{#ask: [[Category:Concept collection]] [[skos:inScheme::MIxS]]
+ The following creates a subheading for each collections, provides an index within the collection, and then a table of concepts:
+-->{{#ask: [[Category:Concept collection]] [[skos:inScheme::MIxS]]
 | ? #-
 | link=none
@@ Line 16: / Line 25: @@
 | template=Concept_Table_grouped_by_Collection_1
 | searchlabel=<i>&#32;…&nbsp;see also further results and collections</i>
-| limit=17 <!-- 18 or 20 seems to high to display it all AP 2020-01-23 16:51:54-->
+| limit={{#var: collectionsDisplayLimit}}
+| outro={{Anchor|further collection results}}
 }}