Difference between revisions of "GGBN-MIxS Mapping"

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Line 14: Line 14:
 
|[[ggbn:amplificationDate]]|| ||  
 
|[[ggbn:amplificationDate]]|| ||  
 
|-
 
|-
|[[ggbn:amplificationMethod]]|| [[Property:skos:exactMatch]] || [[mixs:nucl_acid_amp]]
+
|[[ggbn:amplificationMethod]]|| [[Property:skos:exactMatch|skos:exactMatch]] || [[mixs:nucl_acid_amp]]
 
|-
 
|-
 
|[[ggbn:amplificationStaff]]|| ||  
 
|[[ggbn:amplificationStaff]]|| ||  
Line 80: Line 80:
 
|[[ggbn:loanIdentifier]]|| ||  
 
|[[ggbn:loanIdentifier]]|| ||  
 
|-
 
|-
|[[ggbn:marker]]|| [[Property:skos:exactMatch]] || [[mixs:target gene]]
+
|[[ggbn:marker]]|| [[Property:skos:exactMatch|skos:exactMatch]] || [[mixs:target gene]]
 
|-
 
|-
 
|[[ggbn:markerAccordance]]|| ||  
 
|[[ggbn:markerAccordance]]|| ||  
 
|-
 
|-
|[[ggbn:markerSubfragment]]|| ||  
+
|[[ggbn:markerSubfragment]]|| [[Property:skos:exactMatch|skos:exactMatch]] || [[mixs:target_subfragment]]
 
|-
 
|-
 
|[[ggbn:materialSampleType]]|| ||  
 
|[[ggbn:materialSampleType]]|| ||  
Line 108: Line 108:
 
|[[ggbn:preparationDate]]|| ||
 
|[[ggbn:preparationDate]]|| ||
 
|-
 
|-
|[[ggbn:preparationMaterials]]|| [[Property:skos:exactMatch]] || [[mixs:nucl acid ext]]
+
|[[ggbn:preparationMaterials]]|| [[Property:skos:exactMatch|skos:exactMatch]] || [[mixs:nucl acid ext]]
 
|-
 
|-
 
|[[ggbn:preparationProcess]]|| ||
 
|[[ggbn:preparationProcess]]|| ||
Line 122: Line 122:
 
|[[ggbn:preservationType]]|| ||
 
|[[ggbn:preservationType]]|| ||
 
|-
 
|-
|[[ggbn:primerName]]|| [[Property:skos:relatedMatch]] || [[mixs:pcr primers]]
+
|[[ggbn:primerName]]|| [[Property:skos:relatedMatch|skos:relatedMatch]] || [[mixs:pcr primers]]
 
|-
 
|-
|[[ggbn:primerNameForward]]|| ||
+
|[[ggbn:primerNameForward]]|| [[Property:skos:relatedMatch|skos:relatedMatch]] || [[mixs:pcr primers]]
 
|-
 
|-
|[[ggbn:primerNameReverse]]|| ||
+
|[[ggbn:primerNameReverse]]|| [[Property:skos:relatedMatch|skos:relatedMatch]] || [[mixs:pcr primers]]
 
|-
 
|-
 
|[[ggbn:primerReferenceCitation]]|| ||
 
|[[ggbn:primerReferenceCitation]]|| ||
Line 140: Line 140:
 
|[[ggbn:primerReferenceLinkReverse]]|| ||
 
|[[ggbn:primerReferenceLinkReverse]]|| ||
 
|-
 
|-
|[[ggbn:primerSequence]]|| ||
+
|[[ggbn:primerSequence]]|| [[Property:skos:relatedMatch|skos:relatedMatch]] || [[mixs:pcr primers]]
 
|-
 
|-
|[[ggbn:primerSequenceForward]]|| ||
+
|[[ggbn:primerSequenceForward]]|| [[Property:skos:relatedMatch|skos:relatedMatch]] || [[mixs:pcr primers]]
 
|-
 
|-
|[[ggbn:primerSequenceReverse]]|| ||
+
|[[ggbn:primerSequenceReverse]]|| [[Property:skos:relatedMatch|skos:relatedMatch]] || [[mixs:pcr primers]]
 
|-
 
|-
|[[ggbn:purificationMethod]]|| ||
+
|[[ggbn:purificationMethod]]|| [[Property:skos:relatedMatch|skos:relatedMatch]] || [[mixs:nucl acid ext]]
 
|-
 
|-
 
|[[ggbn:quality]]|| ||
 
|[[ggbn:quality]]|| ||
Line 166: Line 166:
 
|[[ggbn:sequencingDirection]]|| ||
 
|[[ggbn:sequencingDirection]]|| ||
 
|-
 
|-
|[[ggbn:sequencingMethod]]|| [[Property:skos:exactMatch]] || [[mixs:seq meth]]
+
|[[ggbn:sequencingMethod]]|| [[Property:skos:exactMatch|skos:exactMatch]] || [[mixs:seq meth]]
 
|-
 
|-
 
|[[ggbn:sequencingStaff]]|| ||
 
|[[ggbn:sequencingStaff]]|| ||
Line 176: Line 176:
 
|[[ggbn:stainingMethod]]|| ||
 
|[[ggbn:stainingMethod]]|| ||
 
|-
 
|-
|[[ggbn:volume]]|| ||
+
|[[ggbn:volume]]|| [[Property:skos:relatedMatch|skos:relatedMatch]] || [[mixs:samp_size]]
 
|-
 
|-
 
|[[ggbn:volumeUnit]]|| ||
 
|[[ggbn:volumeUnit]]|| ||
 
|-
 
|-
|[[ggbn:weight]]|| ||
+
|[[ggbn:weight]]|| [[Property:skos:relatedMatch|skos:relatedMatch]] || [[mixs:samp_size]]
 
|-
 
|-
 
|[[ggbn:weightUnit]]|| ||
 
|[[ggbn:weightUnit]]|| ||

Latest revision as of 09:59, 5 June 2015

GGBN relation MIxS
ggbn:BOLDProcessID
ggbn:DNADNAHybridization
ggbn:DNAMeltingPoint
ggbn:DNAThreshold
ggbn:GC-content
ggbn:amplificationDate
ggbn:amplificationMethod skos:exactMatch mixs:nucl_acid_amp
ggbn:amplificationStaff
ggbn:amplificationSuccess
ggbn:amplificationSuccessDetails
ggbn:barcodeSequence
ggbn:blocked
ggbn:blockedUntil
ggbn:chromatogramFileURI
ggbn:cloneStrain
ggbn:cloningDate
ggbn:cloningMethod
ggbn:cloningStaff
ggbn:concentration
ggbn:concentrationUnit
ggbn:consensusSequence
ggbn:consensusSequenceChromatogramFileURI
ggbn:consensusSequenceLength
ggbn:fragmentLength
ggbn:gelBuffer
ggbn:gelConcentration
ggbn:gelDuration
ggbn:gelLadder
ggbn:gelRemarks
ggbn:gelStain
ggbn:gelStainConcentration
ggbn:gelVoltage
ggbn:geneticAccessionNumber
ggbn:geneticAccessionURI
ggbn:haplotype
ggbn:loanConditions
ggbn:loanDate
ggbn:loanDestination
ggbn:loanIdentifier
ggbn:marker skos:exactMatch mixs:target gene
ggbn:markerAccordance
ggbn:markerSubfragment skos:exactMatch mixs:target_subfragment
ggbn:materialSampleType
ggbn:methodDeterminationConcentrationAndRatios
ggbn:methodDeterminationWeight
ggbn:percentAboveThreshold
ggbn:permitStatus
ggbn:permitStatusQualifier
ggbn:permitText
ggbn:permitType
ggbn:permitURI
ggbn:plasmid
ggbn:preparationDate
ggbn:preparationMaterials skos:exactMatch mixs:nucl acid ext
ggbn:preparationProcess
ggbn:preparationType
ggbn:preparedBy
ggbn:preservationDateBegin
ggbn:preservationTemperature
ggbn:preservationType
ggbn:primerName skos:relatedMatch mixs:pcr primers
ggbn:primerNameForward skos:relatedMatch mixs:pcr primers
ggbn:primerNameReverse skos:relatedMatch mixs:pcr primers
ggbn:primerReferenceCitation
ggbn:primerReferenceCitationForward
ggbn:primerReferenceCitationReverse
ggbn:primerReferenceLink
ggbn:primerReferenceLinkForward
ggbn:primerReferenceLinkReverse
ggbn:primerSequence skos:relatedMatch mixs:pcr primers
ggbn:primerSequenceForward skos:relatedMatch mixs:pcr primers
ggbn:primerSequenceReverse skos:relatedMatch mixs:pcr primers
ggbn:purificationMethod skos:relatedMatch mixs:nucl acid ext
ggbn:quality
ggbn:qualityCheckDate
ggbn:qualityRemarks
ggbn:ratioOfAbsorbance260 230
ggbn:ratioOfAbsorbance260 280
ggbn:receivedFrom
ggbn:sequence
ggbn:sequencingDate
ggbn:sequencingDirection
ggbn:sequencingMethod skos:exactMatch mixs:seq meth
ggbn:sequencingStaff
ggbn:singleSequence
ggbn:singleSequenceLength
ggbn:stainingMethod
ggbn:volume skos:relatedMatch mixs:samp_size
ggbn:volumeUnit
ggbn:weight skos:relatedMatch mixs:samp_size
ggbn:weightUnit
ggbnvoc:Collecting Permit
ggbnvoc:Contract
ggbnvoc:Copyright
ggbnvoc:Data use
ggbnvoc:Exemption Permit
ggbnvoc:Export Permit
ggbnvoc:Genetically Modified Organism
ggbnvoc:Human Pathogens
ggbnvoc:Import Permit
ggbnvoc:Intellectual Property Rights
ggbnvoc:Internationally Recognized Certificate of Compliance
ggbnvoc:Material Transfer Agreement
ggbnvoc:Memorandum of Cooperation
ggbnvoc:Memorandum of Understanding
ggbnvoc:Other
ggbnvoc:Patent
ggbnvoc:Permit available
ggbnvoc:Permit not available
ggbnvoc:Permit not required
ggbnvoc:Phytosanitary
ggbnvoc:Salvage
ggbnvoc:Unknown
ggbnvoc:Veterinary Certificate
ggbnvoc:high
ggbnvoc:low
ggbnvoc:medium
ggbnvoc:permitStatus vocabulary
ggbnvoc:permitType vocabulary
ggbnvoc:quality vocabulary
mixs:adapters
mixs:altitude
mixs:annot source
mixs:assembly
mixs:biotic relationship
mixs:chimera check
mixs:collection date
mixs:depth
mixs:encoded traits
mixs:env biome
mixs:env feature
mixs:env material
mixs:env package
mixs:estimated size
mixs:experimental factor
mixs:extrachrom elements
mixs:finishing strategy
mixs:geo loc name
mixs:health disease stat
mixs:host spec range
mixs:investigation type
mixs:isol growth condt
mixs:lat lon
mixs:lib const meth
mixs:lib reads seqd
mixs:lib screen
mixs:lib size
mixs:lib vector
mixs:mid
mixs:num replicons
mixs:pathogenicity
mixs:ploidy
mixs:pool dna extracts
mixs:project name
mixs:propagation
mixs:ref biomaterial
mixs:rel to oxygen
mixs:samp collect device
mixs:samp mat process
mixs:samp size
mixs:seq quality check
mixs:sieving
mixs:sop
mixs:source mat id
mixs:specific host
mixs:submitted to insdc
mixs:subspecf gen lin
mixs:trophic level