GGBN

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Namespace URI: http://data.ggbn.org/schemas/ggbn/terms/ with preferred namespace prefix “ggbn”.

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Collections in GGBN:

GGBN Amplification Vocabulary  •  GGBN DNA Cloning Vocabulary  •  GGBN Gel Image Vocabulary  •  GGBN Loan Vocabulary  •  GGBN Material Sample Vocabulary  •  GGBN Permit Vocabulary  •  GGBN Preparation Vocabulary  •  GGBN Preservation Vocabulary  •  GGBN Single Read Vocabulary

Concepts in GGBN (grouped by collection):

GGBN Amplification Vocabulary

By label: Amplification Date  •  Amplification Method  •  Amplification Staff  •  Amplification Success  •  Amplification Success Details  •  BOLD Process ID  •  Barcode Sequence  •  Consensus Sequence  •  Consensus Sequence Chromatogram URI  •  Consensus Sequence Length  •  End Repair  •  Genetic Accession Number  •  Genetic Accession URI  •  Guanin-Cytosine content  •  Haplotype  •  Marker  •  Marker Accordance  •  Marker Subfragment  •  PCR Cycle Number  •  PCR Replicate Number  •  Primer Name  •  Primer Name (Forward)  •  Primer Name (Reverse)  •  Primer Reference Citation  •  Primer Reference Citation (Forward)  •  Primer Reference Citation (Reverse)  •  Primer Reference Link  •  Primer Reference Link (Forward)  •  Primer Reference Link (Reverse)  •  Primer Sequence  •  Primer Sequence (Forward)  •  Primer Sequence (Reverse)  •  Purification Method (DNA or Amplification)  •  adapters  •  annotation source  •  assembly  •  chimera check  •  finishing strategy  •  multiplex identifiers  •  relevant standard operating procedures  •  sequence quality check

By concept name: ggbn:amplificationDate  •  ggbn:amplificationMethod  •  ggbn:amplificationStaff  •  ggbn:amplificationSuccess  •  ggbn:amplificationSuccessDetails  •  ggbn:barcodeSequence  •  ggbn:BOLDProcessID  •  ggbn:consensusSequence  •  ggbn:consensusSequenceChromatogramFileURI  •  ggbn:consensusSequenceLength  •  ggbn:endRepair  •  ggbn:GC-content  •  ggbn:geneticAccessionNumber  •  ggbn:geneticAccessionURI  •  ggbn:haplotype  •  ggbn:marker  •  ggbn:markerAccordance  •  ggbn:markerSubfragment  •  ggbn:pcrCycleNumber  •  ggbn:pcrReplicateNumber  •  ggbn:primerName  •  ggbn:primerNameForward  •  ggbn:primerNameReverse  •  ggbn:primerReferenceCitation  •  ggbn:primerReferenceCitationForward  •  ggbn:primerReferenceCitationReverse  •  ggbn:primerReferenceLink  •  ggbn:primerReferenceLinkForward  •  ggbn:primerReferenceLinkReverse  •  ggbn:primerSequence  •  ggbn:primerSequenceForward  •  ggbn:primerSequenceReverse  •  ggbn:purificationMethod  •  mixs:adapters  •  mixs:annot source  •  mixs:assembly  •  mixs:chimera check  •  mixs:finishing strategy  •  mixs:mid  •  mixs:seq quality check  •  mixs:sop

GGBN DNA Cloning Vocabulary

By label: Clone Strain  •  Cloning Date  •  Cloning Method  •  Cloning Staff  •  Plasmid  •  Primer Name  •  Primer Name (Forward)  •  Primer Name (Reverse)  •  Primer Reference Citation  •  Primer Reference Citation (Forward)  •  Primer Reference Citation (Reverse)  •  Primer Reference Link  •  Primer Reference Link (Forward)  •  Primer Reference Link (Reverse)  •  Primer Sequence  •  Primer Sequence (Forward)  •  Primer Sequence (Reverse)  •  library construction method  •  library reads sequenced  •  library screening strategy  •  library size  •  library vector

By concept name: ggbn:cloneStrain  •  ggbn:cloningDate  •  ggbn:cloningMethod  •  ggbn:cloningStaff  •  ggbn:plasmid  •  ggbn:primerName  •  ggbn:primerNameForward  •  ggbn:primerNameReverse  •  ggbn:primerReferenceCitation  •  ggbn:primerReferenceCitationForward  •  ggbn:primerReferenceCitationReverse  •  ggbn:primerReferenceLink  •  ggbn:primerReferenceLinkForward  •  ggbn:primerReferenceLinkReverse  •  ggbn:primerSequence  •  ggbn:primerSequenceForward  •  ggbn:primerSequenceReverse  •  mixs:lib const meth  •  mixs:lib reads seqd  •  mixs:lib screen  •  mixs:lib size  •  mixs:lib vector

GGBN Gel Image Vocabulary

By label: DNA Threshold  •  Gel Buffer  •  Gel Concentration  •  Gel Duration  •  Gel Ladder  •  Gel Remarks  •  Gel Stain  •  Gel Stain Concentration  •  Gel Voltage  •  Identifier  •  Percent above Threshold  •  Staining Method

By concept name: dcterms:identifier  •  ggbn:DNAThreshold  •  ggbn:gelBuffer  •  ggbn:gelConcentration  •  ggbn:gelDuration  •  ggbn:gelLadder  •  ggbn:gelRemarks  •  ggbn:gelStain  •  ggbn:gelStainConcentration  •  ggbn:gelVoltage  •  ggbn:percentAboveThreshold  •  ggbn:stainingMethod

GGBN Loan Vocabulary

By label: Blocked  •  Blocked Until  •  Disposition  •  Loan Conditions  •  Loan Date  •  Loan Destination,Loaned To  •  Loan Identifier,Loan Number  •  Received From

By concept name: dwc:disposition  •  ggbn:blocked  •  ggbn:blockedUntil  •  ggbn:loanConditions  •  ggbn:loanDate  •  ggbn:loanDestination  •  ggbn:loanIdentifier  •  ggbn:receivedFrom

GGBN Material Sample Vocabulary

By label: Concentration (DNA)  •  DNA Melting Point  •  DNA-DNA Hybridization  •  High  •  Low  •  Material Sample Type  •  Medium  •  Method used for Determination of Concentration and Ratios of Absorbance (DNA)  •  Method used for Determination of Weight  •  Purification Method (DNA or Amplification)  •  Quality  •  Quality Check Date  •  Quality Remarks  •  Quality Vocabulary  •  Ratio of Absorbance 260/230 (DNA)  •  Ratio of Absorbance 260/280 (DNA)  •  Sample Designation  •  Unit of Concentration (DNA)  •  Unit of Volume  •  Unit of Weight  •  Volume  •  Weight  •  estimated Size  •  sample size

By concept name: ggbn:concentration  •  ggbn:concentrationUnit  •  ggbn:DNADNAHybridization  •  ggbn:DNAMeltingPoint  •  ggbn:materialSampleType  •  ggbn:methodDeterminationConcentrationAndRatios  •  ggbn:methodDeterminationWeight  •  ggbn:purificationMethod  •  ggbn:quality  •  ggbn:qualityCheckDate  •  ggbn:qualityRemarks  •  ggbn:ratioOfAbsorbance260 230  •  ggbn:ratioOfAbsorbance260 280  •  ggbn:sampleDesignation  •  ggbn:volume  •  ggbn:volumeUnit  •  ggbn:weight  •  ggbn:weightUnit  •  ggbnvoc:high  •  ggbnvoc:low  •  ggbnvoc:medium  •  ggbnvoc:quality vocabulary  •  mixs:estimated size  •  mixs:samp size

GGBN Permit Vocabulary

By label: Collecting Permit  •  Contract  •  Copyright  •  Data use  •  Expemtion Permit  •  Export Permit  •  Genetically Modified Organism  •  Human Pathogens  •  Import Permit  •  Intellectual Property Rights (IPR)  •  Internationally Recognized Certificate of Compliance (IRCC)  •  Material Transfer Agreement (MTA)  •  Memorandum of Cooperation (MoC)  •  Memorandum of Understanding (MoU)  •  Other  •  Patent  •  Permit Status  •  Permit Status Qualifier  •  Permit Text  •  Permit Type  •  Permit URI  •  Permit available  •  Permit not available  •  Permit not required  •  Phytosanitary  •  Salvage  •  Unknown  •  Veterinary Certificate  •  permitStatus Vocabulary  •  permitType vocabulary

By concept name: ggbn:permitStatus  •  ggbn:permitStatusQualifier  •  ggbn:permitText  •  ggbn:permitType  •  ggbn:permitURI  •  ggbnvoc:Collecting Permit  •  ggbnvoc:Contract  •  ggbnvoc:Copyright  •  ggbnvoc:Data use  •  ggbnvoc:Exemption Permit  •  ggbnvoc:Export Permit  •  ggbnvoc:Genetically Modified Organism  •  ggbnvoc:Human Pathogens  •  ggbnvoc:Import Permit  •  ggbnvoc:Intellectual Property Rights  •  ggbnvoc:Internationally Recognized Certificate of Compliance  •  ggbnvoc:Material Transfer Agreement  •  ggbnvoc:Memorandum of Cooperation  •  ggbnvoc:Memorandum of Understanding  •  ggbnvoc:Other  •  ggbnvoc:Patent  •  ggbnvoc:Permit available  •  ggbnvoc:Permit not available  •  ggbnvoc:Permit not required  •  ggbnvoc:permitStatus vocabulary  •  ggbnvoc:permitType vocabulary  •  ggbnvoc:Phytosanitary  •  ggbnvoc:Salvage  •  ggbnvoc:Unknown  •  ggbnvoc:Veterinary Certificate

GGBN Preparation Vocabulary

By label: Associated References  •  Preparation Date  •  Preparation Materials  •  Preparation Process  •  Preparation Type  •  Prepared By

By concept name: dwc:associatedReferences  •  ggbn:preparationDate  •  ggbn:preparationMaterials  •  ggbn:preparationProcess  •  ggbn:preparationType  •  ggbn:preparedBy

GGBN Preservation Vocabulary

By label: Preservation Date Begin  •  Preservation Temperature  •  Preservation Type  •  Sequence (order)

By concept name: ggbn:preservationDateBegin  •  ggbn:preservationTemperature  •  ggbn:preservationType  •  ggbn:sequence

GGBN Single Read Vocabulary

By label: Chromatogram File URI  •  Fragment Length  •  Primer Name  •  Primer Reference Citation  •  Primer Reference Link  •  Primer Sequence  •  Sequencing Date  •  Sequencing Direction  •  Sequencing Method  •  Sequencing Staff  •  Single Sequence  •  Single Sequence Length

By concept name: ggbn:chromatogramFileURI  •  ggbn:fragmentLength  •  ggbn:primerName  •  ggbn:primerReferenceCitation  •  ggbn:primerReferenceLink  •  ggbn:primerSequence  •  ggbn:sequencingDate  •  ggbn:sequencingDirection  •  ggbn:sequencingMethod  •  ggbn:sequencingStaff  •  ggbn:singleSequence  •  ggbn:singleSequenceLength