Difference between revisions of "GGBN Single Read Vocabulary"
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{{Concept collection | {{Concept collection | ||
|concept scheme=GGBN Data Standard | |concept scheme=GGBN Data Standard | ||
|description=These terms have been developed for specific GGBN purposes but can be used in any other molecular context. The single read vocabulary terms are specific to the aspects of a single read, including chromatograms. The vocabulary is still under review. We appreciate any input or feedback. To do so please contact the GGBN secretariat at ggbn[at]si.edu. | |description=These terms have been developed for specific GGBN purposes but can be used in any other molecular context. The single read vocabulary terms are specific to the aspects of a single read, including chromatograms. The vocabulary is still under review. We appreciate any input or feedback. To do so please contact the GGBN secretariat at ggbn[at]si.edu. | ||
| + | |concept collection=GGBN Amplification Vocabulary | ||
}} | }} | ||
| + | <div class='wikinote'>'''Principal usage:''' The GGBN Single Read Vocabulary is meant to be used with a 1:many:many relation for 1 DNA record. This is to cover all single reads done with a single DNA sample. Currently it is not possible to use this vocabulary within Darwin Core-Archive, since Darwin Core-Archive is based on the Star Schema, allowing a maximum of 2 levels (1:many, not 1:many:many). GGBN is working on a solution together with the Darwin Core and GBIF team. If you want to use this vocabulary, please use [http://www.dnabank-network.org/schemas/ggbn/terms/ABCDGGBN.html ABCDGGBN] instead. The advantages of the complex ABCD structure allow full support for this vocabulary. GGBN requirements and recommendations for usage and example content will follow soon.</div> | ||
Latest revision as of 15:45, 22 June 2015
Description: These terms have been developed for specific GGBN purposes but can be used in any other molecular context. The single read vocabulary terms are specific to the aspects of a single read, including chromatograms. The vocabulary is still under review. We appreciate any input or feedback. To do so please contact the GGBN secretariat at ggbn[at]si.edu.
This is a collection within the GGBN Data Standard. It contains the following concepts:
By label: Chromatogram File URI • Fragment Length • Primer Name • Primer Reference Citation • Primer Reference Link • Primer Sequence • Sequencing Date • Sequencing Direction • Sequencing Method • Sequencing Staff • Single Sequence • Single Sequence Length
By concept name: ggbn:chromatogramFileURI • ggbn:fragmentLength • ggbn:primerName • ggbn:primerReferenceCitation • ggbn:primerReferenceLink • ggbn:primerSequence • ggbn:sequencingDate • ggbn:sequencingDirection • ggbn:sequencingMethod • ggbn:sequencingStaff • ggbn:singleSequence • ggbn:singleSequenceLength
This concept collection is itself member of collection GGBN Amplification Vocabulary.
