Edit Concept scheme: GGBN Data Standard

Note: To change the list of concept collections of a concept scheme, please edit the concept collection pages.

Free text below the template:

The [http://www.ggbn.org Global Genome Biodiversity Network (GGBN)] is a global network of well-managed collections of genomic tissue samples from across the Tree of Life, benefiting society through biodiversity research, development and conservation. This network will foster collaborations among repositories of molecular biodiversity in order to ensure quality standards, improve best practices, secure interoperability, and harmonize exchange of material in accordance with national and international legislation and conventions. <div class="wikinote">'''Citation:''' Droege et al. (2016): The Global Genome Biodiversity Network (GGBN) Standard Specification. DATABASE. [http://database.oxfordjournals.org/content/2016/baw125.full doi: 10.1093/database/baw125]</div> The GGBN Data Standard is a set of vocabularies designed to represent tissue, DNA or RNA samples associated to voucher specimens, tissue samples and collections. ''Contributors: Gabriele Droege, Katharine Barker, Walter G. Berendsohn, Sean Brady, Carol Butler, E. Margaret Casey, Jonathan Coddington, John Deck, Birgit Gemeinholzer, Anton Güntsch, Jörg Holetschek, Tom Hollowell, Patricia Kelbert, Hans-Peter Klenk, Renzo Kottmann, Christopher Lewis, Chris Lyal, Jacqueline Mackenzie-Dodds, Christopher Meyer, Daniel Mulcahy, Éamonn Ó Tuama, Thomas Orrell, Gitte Petersen, Astrid Schories, Ole Seberg, Jamie Whitacre, Pelin Yilmaz, Holger Zetzsche, Yong Zhang, Xin Zhou, Erica Benson, Boyke Bunk, Enrique Arbeláez Cortés, Boyke Bunk, René Dekker, Markus Döring, Sonya Dyhrman, Paul Flemons, Elisabeth Haring, Thomas Knebelsberger, Ivayolo Kostadinov, Rita T. Lawlor, Jon Norenburg, Sara Y. Nussbeck, Michael Raupach, Thomas von Rintelen, Tim Robertson, Larissa Smirnova, Carola Söhngen, Sun Ying, Lee A. Weigt, John Wieczorek, Kenneth Wurdack, Elizabeth Zimmer.'' == Introduction == Genomic samples of non-model organisms are becoming increasingly important in a broad range of studies from developmental biology, biodiversity analyses, to conservation. Genomic sample definition, description, quality, voucher information and metadata all need to be digitized and disseminated across scientific communities. This information needs to be concise and consistent in today’s ever-increasing bioinformatic era, for complementary data aggregators to easily map databases to one another. In order to facilitate exchange of information on genomic samples and their derived data, the Global Genome Biodiversity Network (GGBN) Data Standard is intended to provide a platform based on a documented agreement to promote the efficient sharing and usage of genomic sample material and associated specimen information in a consistent way. The new data standard presented here build upon existing standards commonly used within the community extending them with the capability to exchange data on tissue, environmental and DNA sample as well as sequences. The GGBN Data Standard will reveal and democratize the hidden contents of biodiversity biobanks, for the convenience of everyone in the wider biobanking community. Technical tools exist for data providers to easily map their databases to the standard. The GGBN Data Standard is based on ABCDDNA, that has been developed within the DNA Bank Network. The current GGBN Data Standard is a result of further reviews of ABCDDNA done with the GGBN community. '''The GGBN Data Standard is intended to be used with ABCD or Darwin Core and is not a stand-alone solution!''' Implementations are now available for both [http://data.ggbn.org/schemas/ggbn/terms/ABCDGGBN.html ABCD] and [http://rs.gbif.org/extension/ggbn/ DarwinCore-Archive]. For ABCD two implementations have been made. One for single species samples [http://data.ggbn.org/schemas/ggbn/terms/ABCDGGBN.html ABCDGGBN] and one for environmental samples [http://data.ggbn.org/schemas/ggbn/Enviro/ABCDGGBN_Enviro.html ABCDGGBN-Enviro]. The difference here is, that the GGBN extension is connected to the scientific name instead of the whole record. A GGBN-Enviro implementation for Darwin Core-Archive is currently not available. <div class='wikinote'>'''October 2016: The stable version of the GGBN Data Standard v1.0 can be found at: http://wiki.ggbn.org/ggbn/GGBN_Data_Standard_v1 A list of mandatory and recommended fields for sharing data with GGBN as well as information on how to map your data can be found [http://wiki.ggbn.org/ggbn/Mandatory_and_recommended_fields_for_sharing_data_with_GGBN here].'''</div> Please visit [http://wiki.ggbn.org/ggbn/DwC this page] to find out more about GGBN Data Standard and IPT. == GGBN Data Standard Terms == Loan, Permit, Preparation, and Preservation terms can be used for specimens too and most of them were missing in ABCD/DwC so far. '''Referencing to underlying specimen or tissue is done by relatedResource (DwC) or UnitAssociation (ABCD) respectively'''. <div class='wikinote'>'''NOTE: This is just a summary page of all GGBN Data Standard Terms. Recommendations and examples for using the vocabulary can be found on individual vocabulary pages!'''</div> == Dynamic Term List == === Index to concepts (all collections combined)=== {{Concept scheme/Concepts index list by label and name | scheme_name=GGBN Data Standard | link_style=smwAsk InternalAnchorRef}} <!--The following creates a subheading for each collections, provides an index within the collection, and then a table of concepts:--> {{#ask: [[Category:Concept collection]] [[skos:inScheme::GGBN Data Standard]] | ? #- | link=none | mainlabel=- | format=template | template=Concept_Table_grouped_by_Collection_1 | limit=900 }}

Summary:

This is a minor edit Watch this page

Cancel