Talk:Natural Collections Description
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Contents
Preferred Namespaces and URIs
| Collection | Preferred namespace | Preferred namespace URI |
Is in svn Ontology.owl |
Comments |
|---|---|---|---|---|
| Base | tbase |
http://rs.tdwg.org/ontology/Base# | yes | Collection.rdf[1] defines the namespace "tbase" xmlns:tbase="http://rs.tdwg.org/ontology/Base#"; note: it is also defined as ns "base" in CollectionType.rdf[2] → probably mistakenly.
|
| Core | tcore | http://rs.tdwg.org/ontology/Core# | yes | Procedure.rdf defines the namespace "tcore" xmlns:tcore="http://rs.tdwg.org/ontology/Core#" |
| Collection | ?tco ?tcoll ?ncd-collection |
http://rs.tdwg.org/ontology/voc/Collection# | yes | namespace “ncd-collection” was decided by Gregor Hagedorn, Andreas Plank; following the "t…" naming scheme the briefest namespace is "tco"; tc is already defined by TaxonConcept |
| CollectionType | ?tcot ?tcollt ?tcolltype ?ncd-collectiontype |
http://rs.tdwg.org/ontology/voc/CollectionType# | yes | suggested namespace by Andreas Plank; following the "t…" naming scheme "tcot" namespace is the briefest; tct is already defined by OccurrenceStatusTerm |
| Common | tcom | http://rs.tdwg.org/ontology/voc/Common# | yes | TaxonConcept.rdf or Institution.rdf (among many others) define namespace "tcom" xmlns:tcom="http://rs.tdwg.org/ontology/voc/Common#"; common to all concepts |
| ContactDetails | tcd | http://rs.tdwg.org/ontology/voc/ContactDetails# | yes | namespace "tcd" because ContactDetails.rdf defines xmlns:tcd="http://rs.tdwg.org/ontology/voc/ContactDetails#" |
| CyclicityTerm | tct | http://rs.tdwg.org/ontology/voc/CyclicityTerm# | no | seems in development, namespace "tct" because CyclicityTerm.rdf defines xmlns:tdi="http://rs.tdwg.org/ontology/voc/CyclicityTerm#"; conflicts with OccurrenceStatusTerm that probably defines its "tct" namespace mistakenly |
| DigitalImage | tdi | http://rs.tdwg.org/ontology/voc/DigitalImage# | yes | namespace "tdi" because DigitalImage.rdf defines xmlns:tdi="http://rs.tdwg.org/ontology/voc/DigitalImage#" |
| GeographicRegion | gr | http://rs.tdwg.org/ontology/voc/GeographicRegion# | no | namespace "gr" because GeographicRegion.rdf defines xmlns:gr="http://rs.tdwg.org/ontology/voc/GeographicRegion#" |
| Institution | tinst | http://rs.tdwg.org/ontology/voc/Institution# | yes | namespace "tinst" because Institution.rdf defines xmlns:tinst="http://rs.tdwg.org/ontology/voc/Institution#" |
| InstitutionType | titype | http://rs.tdwg.org/ontology/voc/InstitutionType# | yes | namespace "titype" because Institution.rdf defines xmlns:titype="http://rs.tdwg.org/ontology/voc/InstitutionType#" |
| OccurrenceRecord | tor | http://rs.tdwg.org/ontology/voc/OccurrenceRecord# | no | namespace "tor" because OccurrenceRecord.rdf defines xmlns:tor="http://rs.tdwg.org/ontology/voc/OccurrenceRecord#" |
| OccurrenceStatusTerm | tct | http://rs.tdwg.org/ontology/voc/OccurrenceStatusTerm# | yes | namespace "tct" because OccurrenceStatusTerm.rdf defines xmlns:tct="http://rs.tdwg.org/ontology/voc/OccurrenceStatusTerm#", conflicts with CyclicityTerm |
| Person | tp | http://rs.tdwg.org/ontology/voc/Person# | yes | namespace "tp" because Person.rdf xmlns:tp="http://rs.tdwg.org/ontology/voc/Person#"; conflicts with taxpub's preferred namespace "tp" |
| Procedure | tproc | http://rs.tdwg.org/ontology/voc/Procedure# | yes | Procedure.rdf defines the namespace xmlns:tproc="http://rs.tdwg.org/ontology/voc/Procedure#" |
| PublicationCitation | tpub | http://rs.tdwg.org/ontology/voc/PublicationCitation# | yes | PublicationCitation.rdf defines the namespace xmlns:tpub="http://rs.tdwg.org/ontology/voc/PublicationCitation#" |
| SpeciesProfileModel | spm | http://rs.tdwg.org/ontology/voc/SpeciesProfileModel# | yes | SpeciesProfileModel.rdf defines the namespace xmlns:spm="http://rs.tdwg.org/ontology/voc/SpeciesProfileModel#" |
| SPMInfoItems | spmi | http://rs.tdwg.org/ontology/voc/SPMInfoItems# | no | SPMInfoItems.rdf defines the namespace xmlns:spmi="http://rs.tdwg.org/ontology/voc/SPMInfoItems#"; it's not in the subversion Ontology.owl but listed on TDWG website http://rs.tdwg.org/ontology/voc/ |
| Specimen | tsp | http://rs.tdwg.org/ontology/voc/Specimen# | yes | Specimen.rdf defines the namespace xmlns:tsp="http://rs.tdwg.org/ontology/voc/Specimen#" |
| TaxonConcept | tc | http://rs.tdwg.org/ontology/voc/TaxonConcept# | yes | TaxonConcept.rdf defines the namespace xmlns:tc="http://rs.tdwg.org/ontology/voc/TaxonConcept#" |
| TaxonName | tn | http://rs.tdwg.org/ontology/voc/TaxonName# | yes | TaxonName.rdf defines the namespace xmlns:tn="http://rs.tdwg.org/ontology/voc/TaxonName#" |
| TaxonOccurrence | tto | http://rs.tdwg.org/ontology/voc/TaxonOccurrence# | yes | TaxonOccurrence.rdf defines the namespace xmlns:tto="http://rs.tdwg.org/ontology/voc/TaxonOccurrence# |
| TaxonOccurrenceInteraction | ?? | http://rs.tdwg.org/ontology/voc/TaxonOccurrenceInteraction# | no | TaxonOccurrenceInteraction.rdf defines no namespace; it is not in the subversion Ontology.owl but listed on TDWG website http://rs.tdwg.org/ontology/voc/ |
| TaxonRank | trank | http://rs.tdwg.org/ontology/voc/TaxonRank# | yes | TaxonRank.rdf defines the namespace xmlns:trank="http://rs.tdwg.org/ontology/voc/TaxonRank#" |
| Team | tt | http://rs.tdwg.org/ontology/voc/Team# | yes | Team.rdf defines the namespace xmlns:tt="http://rs.tdwg.org/ontology/voc/Team#" |
| TermWithSource | ?? | http://rs.tdwg.org/ontology/voc/TermWithSource# | no | TermWithSource.rdf defines the namespace; seems in development (is not listed either on TDWG website http://rs.tdwg.org/ontology/voc/) |
Defined namespaces in NCD
TODO decide for namespace prefixes of Collection, CollectionType, Person, TaxonOccurrenceInteraction, TermWithSource --Andreas Plank 09:58, 20 November 2012 (CET)
- Namespace "base" should be "tbase" --Andreas Plank 12:00, 23 November 2012 (CET)
- Namespace "tct" of OccurrenceStatusTerm in OccurrenceStatusTerm.rdf is probably wrong --Andreas Plank 13:27, 23 November 2012 (CET)
- According to declaration of namespaces we could change all defined namespaces by prefixing them with "ncd.". I made a proposal in column "ncd. prefixes" in the table below. For that I removed some "t…" prefixes and kept "t…" prefixes only where I thought it would be necessary --Andreas Plank 13:27, 23 November 2012 (CET)
Form links for creation of NCD concepts
Formlinks are for testing. If data go to the right form field when clicking on a link, then they can be used.
Generation script (Linux)
bash script generateFormlinks4NCD.sh placed in the folder with all RDF files…
#!/bin/bash
ncdPrefixes=("ncd.base" "ncd.cd" "ncd.coll" "ncd.colltype" "ncd.com"
"ncd.core" "ncd.ct" "ncd.di" "ncd.gr" "ncd.inst"
"ncd.itype" "ncd.or" "ncd.ost" "ncd.p" "ncd.proc"
"ncd.pub" "ncd.sp" "ncd.spm" "ncd.spmi" "ncd.t"
"ncd.tc" "ncd.tn" "ncd.to" "ncd.trank" )
# TODO unused: "TaxonOccurrenceInteraction.rdf" "TermWithSource.rdf"
ncdFiles=("Base.rdf" "ContactDetails.rdf" "Collection.rdf" "CollectionType.rdf" "Common.rdf"
"Core.rdf" "CyclicityTerm.rdf" "DigitalImage.rdf" "GeographicRegion.rdf" "Institution.rdf"
"InstitutionType.rdf" "OccurrenceRecord.rdf" "OccurrenceStatusTerm.rdf" "Person.rdf" "Procedure.rdf"
"PublicationCitation.rdf" "Specimen.rdf" "SpeciesProfileModel.rdf" "SPMInfoItems.rdf" "Team.rdf"
"TaxonConcept.rdf" "TaxonName.rdf" "TaxonOccurrence.rdf" "TaxonRank.rdf")
for (( i=0; i<${#ncdPrefixes[@]}; i++ ));do
fileName=${ncdFiles[$i]}
nsPrefix=${ncdPrefixes[$i]}
printf "%2d: %15s %s …" $((i + 1)) $nsPrefix $fileName
if [ -e $fileName ];then
if ! [ -d "./export" ];then
mkdir "./export"
fi
gawk --assign glob_coll_namespacePrefix="$nsPrefix" -f parseNCD.awk "${fileName%.*}.rdf" > "./export/${fileName%.*}.mwt"
printf " (OK)\n"
else
printf " (not existing)\n"
fi
done
awk script parseNCD.awk for generating wikitext formlinks…
#!/bin/awk
# BEGIN {} # block executed before processing
# END {} # block executed after processing
# FS input field separator (default: " ")
# RS record separator (default: newline)
# TODO
# 2012-12-05 18:13:45: glob_instanceOfClass als value mit rdfs:range innheralb des Klassennamens?
# 2012-11-27 11:04:50 check instances of Classes if they are assigned to the right concept type or/and instance-relation (skos:Collection or skos:inScheme or vann:termGroup etc)
##########################################
# This file converts NCD Collection.rdf
# into SMW {{#formlink}}. See also in the
# BEGIN {…} section. An adapted version of
# this file may also be applicable to the
# other RDF files in NCD scheme
#---- Usage: save this file as NCD-Collection.awk and execute:
# fileName="ContactDetails"; gawk --assign glob_coll_namespacePrefix="ncd.cd" -f parseNCD.awk "NCD-$fileName.rdf" > "NCD-$fileName.mwt"
##########################################
#### programm developer checks ###########
# Check for all elements within range of
# e.g. owl:DatatypeProperty to owl:DatatypeProperty
#
# sed --quiet "/owl:DatatypeProperty/,/owl:DatatypeProperty/{ s@\t*@@g; s@[ >].*@@g; p;}" "NCDTest-Collection.rdf" | sort --unique
# sed --quiet "/owl:ObjectProperty/,/owl:ObjectProperty/{ s@\t*@@g; s@[ >].*@@g; p;}" "NCDTest-Collection.rdf" | sort --unique
# sed --quiet "/owl:Class/,/owl:Class/{ s@\t*@@g; s@[ >].*@@g; p;}" "NCDTest-Collection.rdf" | sort --unique
# awk '$0~/<[A-Za-z]+ /{ print $0}' "NCDTest-Collection.rdf" | sed --quiet "s@.*\(<[A-Za-z]\+\).*@\1@g;p" | sort --unique
#--- check elements for instances of classes: get all instances in $filename and list all elements in it (just a programm developer check)
#--- just display execution command:
# filename="NCDTest-Collection.rdf";awk '$0~/<[A-Za-z]+ /{ print $0}' "$filename" | sed --quiet "s@.*<\([A-Za-z]\+\).*@\1@g;p" | sort --unique | sed "s@\(.*\)@sed --quiet \"/<\1/,/<\\\/\1/{ s\@\\\t*\@\@g; s\@[ >].*\@\@g; p;}\" \"$filename\" | sort --unique@"
## execute command:
# filename="NCDTest-Collection.rdf";awk '$0~/<[A-Za-z]+ /{ print $0}' "$filename" | sed --quiet "s@.*<\([A-Za-z]\+\).*@\1@g;p" | sort --unique | sed "s@\(.*\)@sed --quiet \"/<\1/,/<\\\/\1/{ s\@\\\t*\@\@g; s\@[ >].*\@\@g; p;}\" \"$filename\" | sort --unique@" | sh | sort --unique
# perl -pne 'BEGIN {undef $/} s/ │<!--\n\n-->\n\n<!--\n--> +/\n* /gm' NCDTest-Collection.mwt > NCDTest-Collection-export.mwt
##########################################
# GLOBAL VARIABLES start with glob_…
##########################################
BEGIN {
FS ="\"" # field separator to quotation mark " (default is " ")
if(glob_coll_namespacePrefix=="") {glob_coll_namespacePrefix="ncd.missing"}
}# BEGIN
####### functions start ##################
function ltrim(s) { sub(/^[ \t]+/, "", s); return s }
function rtrim(s) { sub(/[ \t]+$/, "", s); return s }
function trim(s) { return rtrim(ltrim(s)); }
function get_rdfsLabel() {
#<rdfs:label>Collection Identifier</rdfs:label>
return trim(gensub(/.*<(rdfs:label)>(.+)<\/rdfs:label>.*/, "\\2", "g", $0))
}# get_rdfsLabel
function get_attributeValueUrlEncoded() {
# must be FS="\"" !!
#<rdfs:domain rdf:resource="#Collection"/>
firstAttributeValue=$2
if (firstAttributeValue~/^#/) {
firstAttributeValue=gensub(/^#/, glob_coll_namespaceUriEncoded, "g", firstAttributeValue)
} else {
firstAttributeValue=gensub(/#/, "%23", "g", firstAttributeValue)
}
return firstAttributeValue
}# get_attributeValueUrlEncoded
function get_xmlDataElement (xpathQuery) {
# use xml_grep and sed to get trimmed single line values
# "xml_grep xml_grep --text_only --cond \"" xpathQuery "\" " FILENAME " | sed 's@^ *@@;:a;N;$!ba;s/\\n\\t\\+//g;'" | getline output
# has less features, e.g. get only the attribute
"xpath " FILENAME " \"" xpathQuery "\" 2>/dev/null | tr --delete '\\n' | sed 's@[ \\t]\\+@ @g;' " | getline output
# 2>/dev/null removes the xpath's script insertions like "-- NODE --"
output = gensub(/<a *href *= *['\"]([^'\">]+)['\"][^>]*>([^<]+)<\/a>/,"<nowiki>\\1</nowiki>", "g", output)#"
output = trim(output)
output = gensub(/<\/p> *<p>/,"</p>%0A%0A<p>", "g", output)
output = gensub(/[ \t]*<\/?p>[ \t]*/,"", "g", output)
output = gensub(/\[\.\.\.\]/,"[…]", "g", output)
return output
}
function get_conceptType(typeUrl){
switch (tolower(gensub(/.*#/,"", "g", typeUrl))) {
case "datatypeproperty":
type="data type"
case "class":
type="class"
case "value":
type="value"
default:
type="property"
}
return type
}
function emptyGlobalVariables() {
glob_conceptDefinition = "";
glob_conceptDomain = "";
glob_conceptID = "";
glob_conceptNotes = "";
glob_conceptRange = "";
glob_conceptType = "";
glob_rdfs_isDefinedBy = "";
glob_rdfs_Label = "";
glob_rdfs_subClassOf = "";
glob_rdfs_subPropertyOf = "";
glob_instanceOfClass = "";
}# emptyGlobalVariables
function create_formLink_Concept_collection() {
print "* {{#formlink: form=Concept collection\n" \
" |link text=" glob_coll_title " [[File:Pencil.png|link=]]\n" \
" |target=" glob_coll_title "\n" \
" |query string =<!--"
print "-->Concept collection[concept scheme]=Natural Collections Description<!--"
if (glob_coll_creators) {print "-->&Concept collection[creators]=" gensub(/ *\/ */, ", ", "g", glob_coll_creators) "<!--" }
if (glob_coll_description) {print "-->&Concept collection[description]=" glob_coll_description "<!--"}
if (glob_coll_notes) {print "-->&Concept collection[notes]=" glob_coll_notes "<!--"}
if (glob_coll_issued) {print "-->&Concept collection[issued]=" glob_coll_issued "<!--"}
if (glob_coll_modified) {print "-->&Concept collection[modified]=" glob_coll_modified "<!--"}
if (glob_coll_namespaceUriEncoded) {print "-->&Concept collection[preferred namespace uri]=<nowiki>" glob_coll_namespaceUriEncoded "</nowiki>" "<!--"}
if (glob_coll_namespacePrefix) {print "-->&Concept collection[preferred namespace prefix]=" glob_coll_namespacePrefix "<!--"}
print "-->}}\n----\n<!--"
}
function create_formLink(conceptID, kindOfConceptComment, startNewOutputSection) {
# use global variables to generate the form link
#### start ####
print ((startNewOutputSection == 0) ? "--> " : "-->\n*" ) \
" {{#formlink: form=Concept\n | link text =" \
glob_coll_namespacePrefix ":" conceptID " [[File:Pencil.png|link=]]\n | target =" glob_coll_namespacePrefix ":" conceptID "\n | query string =<!--" kindOfConceptComment
if (glob_rdfs_Label) print "-->Concept[label]=" glob_rdfs_Label "<!--"
# append all other fields
if (glob_conceptDefinition) print "-->&Concept[definition]=" trim(glob_conceptDefinition) "<!--"
if (glob_conceptNotes) print "-->&Concept[notes]=" trim(glob_conceptNotes) "<!--"
if (glob_conceptType) print "-->&Concept[concept type]=" trim(glob_conceptType) "<!--"
if (glob_rdfs_isDefinedBy)
print "-->&Concept[is defined by]=<nowiki>" trim(glob_rdfs_isDefinedBy) "</nowiki><!--"
else
print "-->&Concept[is defined by]=<nowiki>" glob_coll_namespace_isDefinedBy "</nowiki><!--"
#if (glob_conceptDomain || glob_conceptRange)
print "-->&Concept scheme relation[1][scheme]=Natural Collections Description<!--"
# if instance of class then restrict it to rdfs:domain
i_cr=1 # index concept relation
if (glob_instanceOfClass) glob_conceptDomain = glob_coll_namespaceUriEncoded glob_instanceOfClass
if (glob_conceptDomain) print "-->&Concept scheme relation[1][property domain]=<nowiki>" trim(glob_conceptDomain) "</nowiki><!--"
if (glob_conceptRange) print "-->&Concept scheme relation[1][property range]=<nowiki>" trim(glob_conceptRange) "</nowiki><!--"
if (glob_rdfs_subPropertyOf) {print "-->&Concept relation[" i_cr "][relation]=rdfs: subproperty of<!--"}
if (glob_rdfs_subPropertyOf) {print "-->&Concept relation[" i_cr "][uri]=<nowiki>" trim(glob_rdfs_subPropertyOf) "</nowiki><!--"
i_cr=i_cr +1
}
if (glob_rdfs_subClassOf) {print "-->&Concept relation[" i_cr "][relation]=rdfs: subclass of<!--"}
if (glob_rdfs_subClassOf) {print "-->&Concept relation[" i_cr "][uri]=<nowiki>" trim(glob_rdfs_subClassOf) "</nowiki><!--"
i_cr=i_cr +1
}
if (glob_coll_title) {print "-->&Concept relation[" i_cr "][relation]=skos: collection<!--"}
if (glob_coll_title) {print "-->&Concept relation[" i_cr "][internal page]=" glob_coll_title "<!--"
i_cr=i_cr +1
}
#### end ####
print "-->}} │<!--"
emptyGlobalVariables()
}# create_formLink
####### functions end ####################
########## Ontology (Collection) ################
/.*<owl:Ontology/,/.*<\/owl:Ontology>/ {
if ($0~/<owl:Ontology/) {
glob_coll_namespace_isDefinedBy=$2
glob_coll_namespaceUriEncoded=$2 "%23"
glob_coll_namespaceUri=$2 "#"
}
if ($0~/<dcterms:issued/) { glob_coll_issued=gensub(/.*([0-9]{4})-([0-9]{2})-([0-9]{2}).*/, "\\1%2F\\2%2F\\3", "g", get_xmlDataElement("*/owl:Ontology/dcterms:issued/text()")) }
if ($0~/<dcterms:modified/) { glob_coll_modified=gensub(/.*([0-9]{4})-([0-9]{2})-([0-9]{2}).*/, "\\1%2F\\2%2F\\3", "g", get_xmlDataElement("*/owl:Ontology/dcterms:modified/text()")) }
glob_coll_title = "NCD" gensub(/([A-Z])/, " \\1", "g", gensub(/(NCD-|\.rdf)/,"", "g", FILENAME))
if ($0~/<dc:publisher/) {}
if ($0~/<dc:creator/) {glob_coll_creators=get_xmlDataElement("*/owl:Ontology/dc:creator/text()")}
if ($0~/<dc:description/) {glob_coll_description=get_xmlDataElement("*/owl:Ontology/dc:description/node()")}
if ($0~/<rdfs:comment/) {glob_coll_notes=get_xmlDataElement("*/owl:Ontology/rdfs:comment/node()")}
if ($0~/<\/owl:Ontology>/) {
create_formLink_Concept_collection()
}
}
########## ObjectProperty ################
# in the range of <owl:ObjectProperty … </owl:ObjectProperty> do:
/.*<owl:ObjectProperty/,/.*<\/owl:ObjectProperty>/ {
glob_conceptType = "property"
# <rdfs:comment <rdfs:domain <rdfs:isDefinedBy <rdfs:label <rdfs:range <rdfs:subPropertyOf
# get glob_conceptID in <owl:ObjectProperty rdf:ID="collectionId">
if ($0~/.*<owl:ObjectProperty/) { # print $2 # check data
glob_conceptID=$2
glob_conceptDefinition = get_xmlDataElement("*/owl:ObjectProperty[@rdf:ID='" glob_conceptID "']/rdfs:comment/node()")
}
else {
if ($0~/<rdfs:label/) { glob_rdfs_Label = get_rdfsLabel() }
if ($0~/.*<rdfs:domain/) { glob_conceptDomain = get_attributeValueUrlEncoded() }
# print "domain: " glob_conceptDomain
if ($0~/.*<rdfs:range/) { glob_conceptRange = get_attributeValueUrlEncoded() }
# print "range: " glob_conceptRange
if ($0~/.*<rdfs:isDefinedBy/) { glob_rdfs_isDefinedBy = get_attributeValueUrlEncoded() }
# print "rdfs:isDefinedBy: " glob_rdfs_isDefinedBy
if ($0~/.*<rdfs:subPropertyOf/) { glob_rdfs_subPropertyOf = get_attributeValueUrlEncoded() }
# print "rdfs:subPropertyOf: " glob_rdfs_subPropertyOf
}# definitions within <owl:ObjectProperty>…</owl:ObjectProperty>
if ($0~/.*<\/owl:ObjectProperty>/) {
print create_formLink(glob_conceptID, "ObjectProperty")
}
}# values in ObjectProperty
########## DatatypeProperty ##############
# in the range of <owl:DatatypeProperty … </owl:DatatypeProperty> do:
/<owl:DatatypeProperty/,/<\/owl:DatatypeProperty>/ {
glob_conceptType="data type"
# <rdfs:comment <rdfs:domain <rdfs:isDefinedBy <rdfs:label <rdfs:range <rdfs:subPropertyOf
# get glob_conceptID in <owl:DatatypeProperty rdf:ID="collectionId">
if ($0~/.*<owl:DatatypeProperty/) { # print $2 # check data
glob_conceptID=$2
glob_conceptDefinition = get_xmlDataElement("*/owl:DatatypeProperty[@rdf:ID='" glob_conceptID "']/rdfs:comment/node()")
# print "rdfs:comment (definition): " glob_conceptDefinition
}
else {
if ($0~/.*<rdfs:label/) { glob_rdfs_Label = get_rdfsLabel() }
# print "rdfs:label: " glob_rdfs_Label
if ($0~/.*<rdfs:domain/) { glob_conceptDomain = get_attributeValueUrlEncoded() }
# print "domain: " glob_conceptDomain
if ($0~/.*<rdfs:range/) { glob_conceptRange = get_attributeValueUrlEncoded() }
if ($0~/.*<rdf:type/) { glob_conceptType = get_conceptType(get_attributeValueUrlEncoded()) }
# print "range: " glob_conceptRange
if ($0~/.*<rdfs:isDefinedBy/) { glob_rdfs_isDefinedBy = get_attributeValueUrlEncoded() }
# print "rdfs:isDefinedBy: " glob_rdfs_isDefinedBy
if ($0~/.*<rdfs:subPropertyOf/) { glob_rdfs_subPropertyOf = get_attributeValueUrlEncoded() }
# print "rdfs:subPropertyOf: " glob_rdfs_subPropertyOf
}# definitions within <owl:DatatypeProperty>…</owl:DatatypeProperty>
if ($0~/.*<\/owl:DatatypeProperty>/) {
#### Create the form link ####
print create_formLink(glob_conceptID, "DatatypeProperty")
}
}# values in DatatypeProperty
########## owl:Class and its instances ####
# Classes and instances of a particular class
$0~/<owl:Class/ {# Class definition starts
classNameID=$2
readingOwlClass=classNameID
glob_conceptDefinition = get_xmlDataElement("*/owl:Class[@rdf:ID='" classNameID "']/rdfs:comment/node()")
}# owl:Class
readingOwlClass != "" {
glob_conceptType = "class"
if ($0~/<rdfs:label>/) { glob_rdfs_Label = get_rdfsLabel() }
if ($0~/.*<rdfs:subClassOf/) { glob_rdfs_subClassOf = get_attributeValueUrlEncoded() }
# print "rdfs:subClassOf: " glob_rdfs_subClassOf
if ($0~/.*<rdfs:isDefinedBy/) { glob_rdfs_isDefinedBy = get_attributeValueUrlEncoded() }
# print "rdfs:isDefinedBy: " glob_rdfs_isDefinedBy
if ($0~/.*<rdf:type/) { glob_conceptType = get_conceptType(get_attributeValueUrlEncoded()) }
}
$0~/.*<\/owl:Class>/ {# Class definition closes
readingOwlClass=""
print create_formLink(classNameID, "Class", 1); # separate for output
}
# reading instances of this class
classNameID != "" {
if(index ($0, "<" classNameID ) > 0) {# an instance of the class was found, e.g. <PrimaryGroupingPrincipleTypeTerm …> of <owl:Class rdf:ID="PrimaryGroupingPrincipleTypeTerm">
glob_conceptType="value"
glob_conceptID=$2
readingInstanceOfClass=classNameID
}# a class property found
if(readingInstanceOfClass) {
if ($0~/.*<rdfs:label/) glob_rdfs_Label = get_rdfsLabel() # get_xmlDataElement("*/" classNameID "[@rdf:ID='" glob_conceptID "']/rdfs:label/node()")
if ($0~/.*<rdfs:comment/) glob_conceptNotes = get_xmlDataElement("*/" classNameID "[@rdf:ID='" glob_conceptID "']/rdfs:comment/node()")
if ($0~/.*<dc:title/) { } # don't know yet what to do with it
if ($0~/.*<base:definition/) glob_conceptDefinition = get_xmlDataElement("*/" classNameID "[@rdf:ID='" glob_conceptID "']/base:definition/node()")
if ($0~/.*<tbase:definition/) glob_conceptDefinition = get_xmlDataElement("*/" classNameID "[@rdf:ID='" glob_conceptID "']/tbase:definition/node()")
if ($0~/.*<rdfs:subClassOf/) { glob_rdfs_subClassOf = get_attributeValueUrlEncoded() }
if ($0~/.*<rdf:type/) { glob_conceptType = get_conceptType(get_attributeValueUrlEncoded()) }
# no glob_rdfs_subPropertyOf but a glob_instanceOfClass
glob_instanceOfClass = classNameID
}
if(index ($0, "</" classNameID ">") > 0) {# the
readingInstanceOfClass=""
print create_formLink(glob_conceptID, "instance of class " classNameID);
}
}
# xml_grep --text_only "owl:Ontology/rdfs:comment" NCDTest-Collection.rdf | sed ':a;N;$!ba;s/\n\t\+//g; s@ *\t*\(.\+\) *\t*@\1@g'
# TODO properties in a class
Base
- ncd.base:BaseThing
│ - ncd.base:Actor │
- ncd.base:Space │
- ncd.base:Name │
- ncd.base:DefinedTerm │ ncd.base:definition │
- ncd.base:MediaObject │
Core
- ncd.core:ContactInformation │
- ncd.core:Organisation │
- ncd.core:Collection │
- ncd.core:Description │
- ncd.core:Geolocalisation │
- ncd.core:Person │
- ncd.core:Place │
- ncd.core:PublicationCitation │
- ncd.core:Specimen │
- ncd.core:Concept │
- ncd.core:Identification │
- ncd.core:Team │
- ncd.core:Observation │
- ncd.core:Gathering │
Collection
- ncd.coll:Collection │
- ncd.coll:DerivedCollection │ ncd.coll:collectionId │ ncd.coll:isPartOfCollection │ ncd.coll:alternativeId │ ncd.coll:descriptionForSpecialists │ ncd.coll:collectionExtent │ ncd.coll:knownToContainTypes │ ncd.coll:primaryGroupingPrinciple │ ncd.coll:primaryPurpose │ ncd.coll:citeAs │ ncd.coll:formationPeriod │ ncd.coll:developmentStatus │ ncd.coll:conservationStatus │ ncd.coll:conservationStatusDate │ ncd.coll:usageRestrictions │ ncd.coll:hasContact │ ncd.coll:hasOwner │ ncd.coll:physicalLocation │ ncd.coll:kingdomCoverage │ ncd.coll:taxonCoverage │ ncd.coll:temporalCoverage │ ncd.coll:taxonCoverageStrength │ ncd.coll:commonNameCoverage │ ncd.coll:commonNameCoverageStrength │ ncd.coll:geospatialCoverage │ ncd.coll:geospatialCoverageStrength │ ncd.coll:geospatialCoordinates │ ncd.coll:livingTimePeriodCoverage │ ncd.coll:livingTimePeriodCoverageStrength │ ncd.coll:collectionType │ ncd.coll:specimenPreservationMethod │ ncd.coll:expeditionNameCoverage │ ncd.coll:collectorNameCoverage │ ncd.coll:relatedCollection │ ncd.coll:itemLevelAccess │
- ncd.coll:DevelopmentStatusTypeTerm │ ncd.coll:activegrowth │ ncd.coll:passivegrowth │ ncd.coll:consumable │ ncd.coll:static │ ncd.coll:decreasing │ ncd.coll:closed │ ncd.coll:lost │ ncd.coll:missing │
- ncd.coll:SpecimenPreservationMethodTypeTerm │ ncd.coll:noTreatment │ ncd.coll:notApplicable │ ncd.coll:fluidPreserved │ ncd.coll:frozen │ ncd.coll:dried │ ncd.coll:driedAndPressed │ ncd.coll:tanned │ ncd.coll:freezeDried │ ncd.coll:glycerin │ ncd.coll:surfaceCoating │ ncd.coll:slideMount │ ncd.coll:embedded │ ncd.coll:pinned │ ncd.coll:controlledAtmosphere │ ncd.coll:cryopreserved │ ncd.coll:recordedAnalog │ ncd.coll:recordedDigital │ ncd.coll:refrigerated │ ncd.coll:semstub │ ncd.coll:skeletonized │ ncd.coll:stasis │
- ncd.coll:PrimaryPurposeTypeTerm │ ncd.coll:research │ ncd.coll:education │ ncd.coll:exhibition │ ncd.coll:ornamental │ ncd.coll:Destructiveanalysis │ ncd.coll:monitoring │ ncd.coll:personal │ ncd.coll:voucher │ ncd.coll:commercial │
- ncd.coll:PrimaryGroupingPrincipleTypeTerm │ ncd.coll:spatial │ ncd.coll:Ecosystems │ ncd.coll:cultural │ ncd.coll:taxonomic │ ncd.coll:relationships │ ncd.coll:expeditions │ ncd.coll:environmental │ ncd.coll:temporal │ ncd.coll:repository │ ncd.coll:national │ ncd.coll:events │ ncd.coll:stage │
- ncd.coll:KingdomTypeTerm │ ncd.coll:Animalia │ ncd.coll:Plantae │ ncd.coll:Fungi │ ncd.coll:Protista │ ncd.coll:Eubacteria │ ncd.coll:Archaebacteria │
- ncd.coll:ConservationStatusTypeTerm │ ncd.coll:McGinley1 │ ncd.coll:McGinley2 │ ncd.coll:McGinley3 │ ncd.coll:McGinley4 │ ncd.coll:McGinley5 │ ncd.coll:McGinley6 │ ncd.coll:McGinley7 │ ncd.coll:McGinley8 │ ncd.coll:McGinley9 │ ncd.coll:McGinley10 │
CollectionType
- ncd.colltype:CollectionTypeTerm │ ncd.colltype:art │ ncd.colltype:living │ ncd.colltype:products │ ncd.colltype:cellcultures │ ncd.colltype:preserved │ ncd.colltype:observations │ ncd.colltype:visual │ ncd.colltype:fossils │ ncd.colltype:archival │ ncd.colltype:audio │ ncd.colltype:texts │ ncd.colltype:electronic │ ncd.colltype:facsimiles │ ncd.colltype:genetic │ ncd.colltype:taxonomic │ ncd.colltype:tissue │
Common
ncd.com:isDeprecated │ ncd.com:isRestricted │ ncd.com:versionedAs │ ncd.com:publishedIn │ ncd.com:publishedInCitation │ ncd.com:microReference │ ncd.com:note │ ncd.com:taxonomicPlacementFormal │ ncd.com:taxonomicPlacementInformal │ ncd.com:hasDigitalImage │ ncd.com:tcsEquivalence │ ncd.com:berlinModelEquivalence │ ncd.com:abcdEquivalence │ ncd.com:darwinCoreEquivalence │
ContactDetails
The NCD RDF sourcfile file is flawed:
- URL is not defined by http://www.w3.org/2001/vcard-rdf/3.0#URL check ContactDetails.rdf of NCD
- TYPE is not defined by http://www.w3.org/2001/vcard-rdf/3.0#TYPE check ContactDetails.rdf of NCD
- ncd.cd:ContactDetails │ ncd.cd:TEL │ ncd.cd:EMAIL │ ncd.cd:ADR │ ncd.cd:GEO │ ncd.cd:URL │ ncd.cd:LOGO │ ncd.cd:NOTE │
- ncd.cd:Address │ ncd.cd:TYPE │ ncd.cd:Pobox │ ncd.cd:Extadd │ ncd.cd:Street │ ncd.cd:Locality │ ncd.cd:Region │ ncd.cd:Pcode │ ncd.cd:Country │
- ncd.cd:ContactTypeTerm │
CyclicityTerm
- ncd.ct:CyclicityTerm │ ncd.ct:Circadian │ ncd.ct:SemiLunar │ ncd.ct:Lunar │ ncd.ct:Seasonal │ ncd.ct:Annual │
DigitalImage
DigitalImage.rdf seems wrong: <owl:Ontology rdf:about="http://rs.tdwg.org/ontology/voc/ContactDetails"> cannot be true, possibly <owl:Ontology rdf:about="http://rs.tdwg.org/ontology/voc/DigitalImage"> is correct
