Difference between revisions of "mixs:chimera check"

Revision as of 20:32, 27 May 2014 (view source) Gabi Dröge (Talk | contribs) ← Older edit		Latest revision as of 15:28, 2 June 2015 (view source) Pelin Yilmaz (Talk | contribs)
(4 intermediate revisions by one other user not shown)
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	{{Concept		{{Concept
−	|label=Chimera Check	+	|label=chimera check
	|definition=A chimeric sequence, or chimera for short, is a sequence comprised of two or more phylogenetically distinct parent sequences. Chimeras are usually PCR artifacts thought to occur when a prematurely terminated amplicon reanneals to a foreign DNA strand and is copied to completion in the following PCR cycles. The point at which the chimeric sequence changes from one parent to the next is called the breakpoint or conversion point		|definition=A chimeric sequence, or chimera for short, is a sequence comprised of two or more phylogenetically distinct parent sequences. Chimeras are usually PCR artifacts thought to occur when a prematurely terminated amplicon reanneals to a foreign DNA strand and is copied to completion in the following PCR cycles. The point at which the chimeric sequence changes from one parent to the next is called the breakpoint or conversion point
	|concept type=property		|concept type=property
Line 6:		Line 6:
	{{Concept scheme relation		{{Concept scheme relation
	|scheme=MIxS		|scheme=MIxS
−	|property cardinality=0..1
	}}		}}
	{{Concept scheme relation		{{Concept scheme relation
−	|scheme=GGBN	+	|scheme=GGBN Data Standard
	|property cardinality=0..1		|property cardinality=0..1
	}}		}}
Line 16:		Line 15:
	|internal page=GGBN Amplification Vocabulary		|internal page=GGBN Amplification Vocabulary
	}}		}}
		+	{{Concept relation
		+	|relation=skos: collection
		+	|internal page=MIxS Sequencing
		+	}}
		+	'''Expected value: ''' name and version of software
		+
		+	'''Requirements (eu, ba, pl, vi, org, me, MIMARKS Survey, MIMARKS Specimen):''' - - - - - - C C
		+
		+	'''Value syntax:''' {text} {text}

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Latest revision as of 15:28, 2 June 2015

Schemes: MIxS , GGBN Data Standard 
Collections: GGBN Amplification Vocabulary , MIxS Sequencing 

chimera check No type definition was found for "chimera_check" in the mixs import. URI: http://gensc.org/ns/mixs/chimera_check

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chimera check: A chimeric sequence, or chimera for short, is a sequence comprised of two or more phylogenetically distinct parent sequences. Chimeras are usually PCR artifacts thought to occur when a prematurely terminated amplicon reanneals to a foreign DNA strand and is copied to completion in the following PCR cycles. The point at which the chimeric sequence changes from one parent to the next is called the breakpoint or conversion point

Constraints in the context of GGBN Data Standard:

• cardinality 0..1 (=optional single occurrence)

Expected value: name and version of software

Requirements (eu, ba, pl, vi, org, me, MIMARKS Survey, MIMARKS Specimen): - - - - - - C C

Value syntax: {text} {text}