GGBN Data Standard

The GGBN Data Standard is a set of vocabularies designed to represent tissue, DNA or RNA samples associated to voucher specimens and collections. Contributors: xxx.

GGBN Data Standard Terms

The GGBN Standard has to be used with Material Sample Core (Darwin Core) or ABCD and is not a stand-alone solution! Loan, Permit, Preparation, and Preservation terms can be used for specimens too and most of them were missing in ABCD/DwC so far. Referencing to underlying specimen or tissue is done by relatedResource (DwC) or UnitAssociation (ABCD) respectively.

Loan Vocabulary

This vocabulary can be used for tissues, DNA/RNA samples, or specimens, depending on mappig source

| dwc:materialSampleID (DwC) | | ggbn:blockedUntil | | ggbn:blocked | | ggbn:loanConditions | | dwc:disposition |

DNA/RNA Vocabulary

| dwc:materialSampleID (DwC) | | ggbn:purificationMethod | | ggbn:ratioOfAbsorbance260_230 | | ggbn:ratioOfAbsorbance260_280 | | ggbn:concentration | | ggbn:concentrationUnit | | ggbn:methodDeterminationConcentrationAndRatios | | ggbn:weight | | ggbn:weightUnit | | ggbn:methodDeterminationWeight | | ggbn:volume | | ggbn:volumeUnit | | ggbn:quality | | ggbn:qualityCheckDate | | ggbn:qualityRemarks | | mixs:DNADNAHybridization | | mixs:DNAMeltingPoint | | mixs:estimatedSize | | mixs:PoolingDNAExtracts |

Gel Image Vocabulary

| dwc:materialSampleID (DwC) | | dcterms:identifier (DwC) | | dcterms:description (DwC) | | ggbn:dcterms:gelVoltage | | ggbn:dcterms:gelConcentration | | ggbn:dcterms:gelDuration | | ggbn:dcterms:gelLadder | | ggbn:dcterms:gelStain |

Amplification Vocabulary

| dwc:materialSampleID (DwC) | | ggbn:amplificationDate | | ggbn:amplificationStaff | | ggbn:amplificationSuccess | | ggbn:amplificationSuccessDetails | | ggbn:purificationMethod | | ggbn:consensusSequence | | ggbn:consensusSequenceLength | | ggbn:consensusSequenceChromatogramFileURI | | ggbn:barcodeSequence | | ggbn:haplotype | | ggbn:primerName (ABCD) | | ggbn:primerNameForward (DwC) | | ggbn:primerNameReverse (DwC) | | ggbn:primerReferenceCitation (ABCD) | | ggbn:primerReferenceCitationForward (DwC) | | ggbn:primerReferenceCitationReverse (DwC) | | ggbn:primerReferenceLink (ABCD) | | ggbn:primerReferenceLinkForward (DwC) | | ggbn:primerReferenceLinkReverse (DwC) | | ggbn:primerSequence (ABCD) | | ggbn:primerSequenceForward (DwC) | | ggbn:primerSequenceReverse (DwC) | | ggbn:geneticAccessionNumber | | ggbn:geneticAccessionURI | | ggbn:BOLDProcessID | | ggbn:marker | | ggbn:Subfragment | | ggbn:LibraryReadsSequenced | | mixs:libraryScreen | | mixs:librarySize | | ggbn:LibraryVector | | ggbn:LibraryConstructionMethod | | mixs:plasmid | | ggbn:GC-Content | | mixs:chimeraCheck | | mixs:assembly | | mixs:sop | | mixs:finishingStrategy | | mixs:annotationSource | | ggbn:MarkerAccordance | | ggbn:SequenceQualityCheck |

DNA Cloning Vocabulary

| dwc:materialSampleID (DwC) | | ggbn:cloningDate | | ggbn:cloningStaff | | ggbn:cloningMethod | | ggbn:cloneStrain | | ggbn:primerName (ABCD) | | ggbn:primerNameForward (DwC) | | ggbn:primerNameReverse (DwC) | | ggbn:primerReferenceCitation (ABCD) | | ggbn:primerReferenceCitationForward (DwC) | | ggbn:primerReferenceCitationReverse (DwC) | | ggbn:primerReferenceLink (ABCD) | | ggbn:primerReferenceLinkForward (DwC) | | ggbn:primerReferenceLinkReverse (DwC) | | ggbn:primerSequence (ABCD) | | ggbn:primerSequenceForward (DwC) | | ggbn:primerSequenceReverse (DwC) |