Difference between revisions of "Germplasm"
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= Darwin Core extension for genebanks = | = Darwin Core extension for genebanks = | ||
| − | The '''[[rdfs:label::Darwin Core extension for genebanks]] | + | The '''Darwin Core extension for genebanks''' (DwC-germplasm) was developed to provide a bridge between the established standards in use by the genebank community for plant genetic resources for food and agriculture (PGRFA) and the standards maintained by the Biodiversity Information Standards/Taxonomic Databases Working Group ([http://www.tdwg.org/ TDWG]). The DwC germplasm provides an extension to the [http://rs.tdwg.org/dwc/terms Darwin Core] standard of the TDWG for occurrences. Darwin Core can be seen as an extension to the Dublin Core Metata Data Initiative ([http://dublincore.org/documents/dcmi-terms/ DCMI]) terms. |
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| + | The primary objective for creating the DwC-germplasm was to describe the additional terminology required for exchange of genebank datasets using the GBIF Integrated Publishing Toolkit ([http://code.google.com/p/gbif-providertoolkit/ IPT]). The terms included in the DwC germplasm are from the Multi-Crop Passport Descriptors ([http://www.bioversityinternational.org/index.php?id=19&user_bioversitypublications_pi1[showUid]=2192 MCPD]) and the proposed descriptors for germplasm characterization and evaluation data (C&E) (see: [http://www.epgris3.eu/EPGRIS3%2020090507workshop.htm ] and [http://www.epgris3.eu/docs/activities/2-05/Inclusion%20of%20C&E%20data.pdf ]) from the [http://www.epgris3.eu/ EPGRIS3] group of the European Cooperative Programme for Plant Genetic Resources ([http://www.ecpgr.cgiar.org/Index.htm%27 ECPGR]). Version 0.1 of the DwC germplasm was developed by the Nordic Genetic Resources Center ([http://www.nordgen.org/ NordGen]) and [http://www.bioversityinternational.org/ Bioversity International] in 2009. | ||
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| + | The [[rdfs:label::Darwin Core extension for genebanks]] is described by the canonical URI "http://rs.nordgen.org/dwc/germplasm/0.1/terms/" (the vocabulary is of rdf:type [[rdf:type::skos:ConceptScheme]]). The preferred namespace prefix is "'''[[vann:preferredNamespacePrefix::germplasm]]'''" with namespace URI = "[[rdfs:isDefinedBy::http://rs.nordgen.org/dwc/germplasm/0.1/terms/]]". Each term will have it's own Wiki page with the description of the term. Terms are presented here organized alphabetical by their group (skos:Collection). The first step when setting up a new vocabulary (with external namespace URIs) is to import the term identifier URIs to the Wiki. This is done using a special wiki page in the "MediaWiki" wiki-namespace and starting with "Smw_import_" followed by the local namespace prefix to be used by the Wiki. For the germplasm terms we use: [[MediaWiki:Smw_import_germplasm]]. | ||
Revision as of 16:09, 20 February 2012
Contents
Darwin Core extension for genebanks
The Darwin Core extension for genebanks (DwC-germplasm) was developed to provide a bridge between the established standards in use by the genebank community for plant genetic resources for food and agriculture (PGRFA) and the standards maintained by the Biodiversity Information Standards/Taxonomic Databases Working Group (TDWG). The DwC germplasm provides an extension to the Darwin Core standard of the TDWG for occurrences. Darwin Core can be seen as an extension to the Dublin Core Metata Data Initiative (DCMI) terms.
The primary objective for creating the DwC-germplasm was to describe the additional terminology required for exchange of genebank datasets using the GBIF Integrated Publishing Toolkit (IPT). The terms included in the DwC germplasm are from the Multi-Crop Passport Descriptors ([showUid=2192 MCPD]) and the proposed descriptors for germplasm characterization and evaluation data (C&E) (see: [1] and [2]) from the EPGRIS3 group of the European Cooperative Programme for Plant Genetic Resources (ECPGR). Version 0.1 of the DwC germplasm was developed by the Nordic Genetic Resources Center (NordGen) and Bioversity International in 2009.
The Darwin Core extension for genebanks is described by the canonical URI "http://rs.nordgen.org/dwc/germplasm/0.1/terms/" (the vocabulary is of rdf:type skos:ConceptScheme). The preferred namespace prefix is "germplasm" with namespace URI = "http://rs.nordgen.org/dwc/germplasm/0.1/terms/". Each term will have it's own Wiki page with the description of the term. Terms are presented here organized alphabetical by their group (skos:Collection). The first step when setting up a new vocabulary (with external namespace URIs) is to import the term identifier URIs to the Wiki. This is done using a special wiki page in the "MediaWiki" wiki-namespace and starting with "Smw_import_" followed by the local namespace prefix to be used by the Wiki. For the germplasm terms we use: MediaWiki:Smw_import_germplasm.
Collection Terms
Minting the groups for organizing the Germplasm Terms here (groups are of rdf:type = skos:Collection).
Concept Terms
Minting the individual Terms here (terms are of rdf:type = skos:Concept).
Collecting Event (germplasm:CollectingEvent)
germplasm:CollectingInstituteCode [5]
Darwin Core extension for genebanks (germplasm)
| Properties | Values | |
|---|---|---|
| Name | rdfs:label | Darwin Core extension for genebanks (germplasm) |
| Namespace | rdfs:isDefinedBy | http://rs.nordgen.org/dwc/germplasm/0.1/terms/ |
| Identifier | dc:identifier | http://rs.nordgen.org/dwc/germplasm/0.1/terms/ |
| Title | dc:title | Darwin Core extension for genebanks (germplasm) |
| Description | dc:description | The Darwin Core extension for genebanks is based on the Darwin Core vocabulary and is designed as an extension to this vocabulary. |
| Creator | dc:creator | Nordic Genetic Resources Center (NordGen) and Bioversity International |
| Version | owl:versionInfo | Version 0.1 |
| Rights holder | dcterms:rightsHolder | Nordic Genetic Resources Center (NordGen) and Bioversity International |
| License | dcterms:license | http://creativecommons.org/publicdomain/zero/1.0/ |
| Type | rdf:type | skos:ConceptScheme |
| Comment | rdfs:comment | The base URI of the Darwin Core extension for genebanks is "http://rs.nordgen.org/dwc/germplasm/0.1/terms/". Please make sure that you are only using element identifiers in this namespace, e.g. "http://rs.nordgen.org/dwc/germplasm/0.1/terms/CollectingInstituteCode". There may be copies of the ontology file on the Web which can be retrieved from other locations, but those locations should not be used as the basis of identifiers. |
| Namespace | vann:preferredNamespaceUri | http://rs.nordgen.org/dwc/germplasm/0.1/terms/ |
| Prefix | vann:preferredNamespacePrefix | germplasm |
| Home page | foaf:homepage | http://code.google.com/p/darwincore-germplasm/ |
