Difference between revisions of "GGBN Data Standard"
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{{!}} [[#dwc:materialSampleID | dwc:materialSampleID (DwC)]] {{!}} | {{!}} [[#dwc:materialSampleID | dwc:materialSampleID (DwC)]] {{!}} | ||
{{!}} [[#ggbn:purificationMethod | ggbn:purificationMethod]] {{!}} | {{!}} [[#ggbn:purificationMethod | ggbn:purificationMethod]] {{!}} | ||
− | {{!}} [[# | + | {{!}} [[#ggbn:ratioOfAbsorbance260_230 | ggbn:ratioOfAbsorbance260_230]] {{!}} |
− | {{!}} [[# | + | {{!}} [[#ggbn:ratioOfAbsorbance260_280 | ggbn:ratioOfAbsorbance260_280]] {{!}} |
− | {{!}} [[# | + | {{!}} [[#ggbn:concentration | ggbn:concentration]] {{!}} |
− | {{!}} [[# | + | {{!}} [[#ggbn:concentrationUnit | ggbn:concentrationUnit]] {{!}} |
− | {{!}} [[# | + | {{!}} [[#ggbn:methodDeterminationConcentrationAndRatios | ggbn:methodDeterminationConcentrationAndRatios]] {{!}} |
− | {{!}} [[# | + | {{!}} [[#ggbn:weight | ggbn:weight]] {{!}} |
− | {{!}} [[# | + | {{!}} [[#ggbn:weightUnit | ggbn:weightUnit]] {{!}} |
− | {{!}} [[# | + | {{!}} [[#ggbn:methodDeterminationWeight | ggbn:methodDeterminationWeight]] {{!}} |
− | {{!}} [[# | + | {{!}} [[#ggbn:volume | ggbn:volume]] {{!}} |
− | {{!}} [[# | + | {{!}} [[#ggbn:volumeUnit | ggbn:volumeUnit]] {{!}} |
− | {{!}} [[# | + | {{!}} [[#ggbn:quality | ggbn:quality]] {{!}} |
− | {{!}} [[# | + | {{!}} [[#ggbn:qualityCheckDate | ggbn:qualityCheckDate]] {{!}} |
− | {{!}} [[# | + | {{!}} [[#ggbn:qualityRemarks | ggbn:qualityRemarks]] {{!}} |
+ | {{!}} [[#mixs:DNADNAHybridization | mixs:DNADNAHybridization]] {{!}} | ||
+ | {{!}} [[#mixs:DNAMeltingPoint | mixs:DNAMeltingPoint]] {{!}} | ||
+ | {{!}} [[#mixs:estimatedSize | mixs:estimatedSize]] {{!}} | ||
+ | {{!}} [[#mixs:PoolingDNAExtracts | mixs:PoolingDNAExtracts]] {{!}} | ||
=== Gel Image Vocabulary === | === Gel Image Vocabulary === |
Revision as of 10:15, 21 May 2014
The GGBN Data Standard is a set of vocabularies designed to represent tissue, DNA or RNA samples associated to voucher specimens and collections. Contributors: xxx.
Contents
Introduction
GGBN Data Standard Terms
The GGBN Standard has to be used with Material Sample Core (Darwin Core) or ABCD and is not a stand-alone solution! Loan, Permit, Preparation, and Preservation terms can be used for specimens too and most of them were missing in ABCD/DwC so far. Referencing to underlying specimen or tissue is done by relatedResource (DwC) or UnitAssociation (ABCD) respectively.
Loan Vocabulary
This vocabulary can be used for tissues, DNA/RNA samples, or specimens, depending on mappig source
| dwc:materialSampleID (DwC) | | ggbn:blockedUntil | | ggbn:blocked | | ggbn:loanConditions | | dwc:disposition |
DNA/RNA Vocabulary
| dwc:materialSampleID (DwC) | | ggbn:purificationMethod | | ggbn:ratioOfAbsorbance260_230 | | ggbn:ratioOfAbsorbance260_280 | | ggbn:concentration | | ggbn:concentrationUnit | | ggbn:methodDeterminationConcentrationAndRatios | | ggbn:weight | | ggbn:weightUnit | | ggbn:methodDeterminationWeight | | ggbn:volume | | ggbn:volumeUnit | | ggbn:quality | | ggbn:qualityCheckDate | | ggbn:qualityRemarks | | mixs:DNADNAHybridization | | mixs:DNAMeltingPoint | | mixs:estimatedSize | | mixs:PoolingDNAExtracts |
Gel Image Vocabulary
| dwc:materialSampleID (DwC) | | dcterms:identifier (DwC) | | dcterms:description (DwC) | | ggbn:dcterms:gelVoltage | | ggbn:dcterms:gelConcentration | | ggbn:dcterms:gelDuration | | ggbn:dcterms:gelLadder | | ggbn:dcterms:gelStain |
Amplification Vocabulary
| dwc:materialSampleID (DwC) | | ggbn:amplificationDate | | ggbn:amplificationStaff | | ggbn:amplificationSuccess | | ggbn:amplificationSuccessDetails | | ggbn:purificationMethod | | ggbn:consensusSequence | | ggbn:consensusSequenceLength | | ggbn:consensusSequenceChromatogramFileURI | | ggbn:barcodeSequence | | ggbn:haplotype | | ggbn:primerName (ABCD) | | ggbn:primerNameForward (DwC) | | ggbn:primerNameReverse (DwC) | | ggbn:primerReferenceCitation (ABCD) | | ggbn:primerReferenceCitationForward (DwC) | | ggbn:primerReferenceCitationReverse (DwC) | | ggbn:primerReferenceLink (ABCD) | | ggbn:primerReferenceLinkForward (DwC) | | ggbn:primerReferenceLinkReverse (DwC) | | ggbn:primerSequence (ABCD) | | ggbn:primerSequenceForward (DwC) | | ggbn:primerSequenceReverse (DwC) | | ggbn:geneticAccessionNumber | | ggbn:geneticAccessionURI | | ggbn:BOLDProcessID | | ggbn:marker | | ggbn:Subfragment |
DNA Cloning Vocabulary
| dwc:materialSampleID (DwC) | | ggbn:cloningDate | | ggbn:cloningStaff | | ggbn:cloningMethod | | ggbn:cloneStrain | | ggbn:primerName (ABCD) | | ggbn:primerNameForward (DwC) | | ggbn:primerNameReverse (DwC) | | ggbn:primerReferenceCitation (ABCD) | | ggbn:primerReferenceCitationForward (DwC) | | ggbn:primerReferenceCitationReverse (DwC) | | ggbn:primerReferenceLink (ABCD) | | ggbn:primerReferenceLinkForward (DwC) | | ggbn:primerReferenceLinkReverse (DwC) | | ggbn:primerSequence (ABCD) | | ggbn:primerSequenceForward (DwC) | | ggbn:primerSequenceReverse (DwC) |